Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_F01
         (904 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              23   2.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   5.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.7  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   8.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   8.8  

>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +1

Query: 37  IHCAXRGFFITDKLVDILCLSVIKCQ 114
           +HC  R  F++D+++      V  CQ
Sbjct: 20  VHCGTRPSFVSDEMIATAASVVNACQ 45


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 530 GTGPSFLQRRDW 565
           GTGP+FL  ++W
Sbjct: 505 GTGPAFLTIKEW 516


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = -3

Query: 554 VVKTTXQCLXYNTTHYRDHFVQESWVRVSLGPSRD-TLERPRP 429
           ++++    L   T H  DH V  SW+    G  +  T  +P P
Sbjct: 452 ILESGTTTLQTRTMHPYDHLVWNSWMPSIRGAIQQWTCRQPEP 494


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = -3

Query: 611 HRSKVPXQRSQXXSFPSHDVVKTTXQCLXYNTTHYRDHFVQESWVRVSLGPSRDTLERP 435
           H+S+   Q  Q  S     + +   Q   Y    + +  V  + VRV LGP  D   RP
Sbjct: 492 HQSQ-QQQEEQTQSRVRAHLKRLDHQPYQYKIAVHSEQNVPGAVVRVFLGPKHDHQGRP 549


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 84  VHQLISDKESAPSTMDITQCSRIPXP 7
           +HQ IS K+ +P+T   ++CS I  P
Sbjct: 266 MHQ-ISKKKLSPATPKGSKCSMITTP 290


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,965
Number of Sequences: 438
Number of extensions: 3515
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)