Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_F01
         (904 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative...    30   2.4  
At2g30590.1 68415.m03727 WRKY family transcription factor              30   2.4  
At3g14470.1 68416.m01833 disease resistance protein (NBS-LRR cla...    28   7.4  
At3g02490.1 68416.m00237 pentatricopeptide (PPR) repeat-containi...    28   7.4  

>At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative
           (UBP5) similar to GI:6648604
          Length = 924

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 184 STPTSFNRSRAARITVFGCNFVMLDTLSLINI 89
           S P  FN +RA  +TVF C+   L +   +N+
Sbjct: 492 SLPLQFNTTRAITVTVFSCDKTALPSTITVNV 523


>At2g30590.1 68415.m03727 WRKY family transcription factor
          Length = 380

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 483 LGTRKLGPLEGYSRAAATCSSSTWCHCAGGRR 388
           L +++  PL+G    +  C SS+ CHCA  R+
Sbjct: 261 LHSKRKCPLKGDEHGSLKCGSSSRCHCAKKRK 292


>At3g14470.1 68416.m01833 disease resistance protein (NBS-LRR
           class), putative domain signature NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1054

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -3

Query: 554 VVKTTXQCLXYNTTHYRDHFVQESWVRVS 468
           V KTT   L YN  H R +F  + W  VS
Sbjct: 207 VGKTTLSQLLYNDQHVRSYFGTKVWAHVS 235


>At3g02490.1 68416.m00237 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 665

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +2

Query: 425 LQVAAALEYPSRGPSLRVPSFLVQSGPYSESYYXLGTGPSFLQR 556
           L+   + ++PS    LRV   +++S  +SE+   L   PS+++R
Sbjct: 592 LKAVTSKKFPSNSMVLRVFEAMLKSARHSEAQDLLSMSPSYIRR 635


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,808,599
Number of Sequences: 28952
Number of extensions: 267883
Number of successful extensions: 622
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2129873112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)