Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_E24
         (919 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    39   5e-05
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    39   5e-05
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    39   5e-05
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    37   2e-04
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    37   2e-04
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    28   0.12 
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    27   0.27 
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    24   1.9  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    22   7.7  

>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 39.1 bits (87), Expect = 5e-05
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 212 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNA 370
           ++ E    +   A L + W D  L WN  E+ G     ++  +LW+PDV++ N+
Sbjct: 42  DVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNS 95



 Score = 29.9 bits (64), Expect = 0.029
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = +3

Query: 387 GDYALRARVSNNGSVSWIKRLDISTPVSMQLDNWPNDMQTCTFKFGSRMHNSDQNGXVID 566
           G +     V +NGS  ++      +   M +  +P D Q C  KFGS  ++ +Q   V++
Sbjct: 102 GTFQTNVVVKHNGSCLYVPPGIFKSTCKMDITWFPFDDQHCDMKFGSWTYDGNQLDLVLN 161


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 39.1 bits (87), Expect = 5e-05
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 212 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNA 370
           ++ E    +   A L + W D  L WN  E+ G     ++  +LW+PDV++ N+
Sbjct: 42  DVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNS 95



 Score = 28.3 bits (60), Expect = 0.089
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = +3

Query: 387 GDYALRARVSNNGSVSWIKRLDISTPVSMQLDNWPNDMQTCTFKFGSRMHNSDQNGXVID 566
           G +     V +NGS  ++      +   + +  +P D Q C  KFGS  ++ +Q   V++
Sbjct: 102 GTFQTNVVVKHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCDMKFGSWTYDGNQLDLVLN 161


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 39.1 bits (87), Expect = 5e-05
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 212 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNA 370
           ++ E    +   A L + W D  L WN  E+ G     ++  +LW+PDV++ N+
Sbjct: 42  DVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNS 95



 Score = 27.5 bits (58), Expect = 0.16
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +3

Query: 387 GDYALRARVSNNGSVSWIKRLDISTPVSMQLDNWPNDMQTCTFKFGSRMHNSDQNGXVID 566
           G +     V + GS  ++      +   M +  +P D Q C  KFGS  ++ +Q   V++
Sbjct: 102 GTFQTNVVVKHGGSCLYVPPGIFKSTCKMDITWFPFDDQHCDMKFGSWTYDGNQLDLVLN 161


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 37.1 bits (82), Expect = 2e-04
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 254 LQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNA 370
           L + W D  L WN  E+ G     ++  +LW+PDV++ N+
Sbjct: 56  LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNS 95



 Score = 27.5 bits (58), Expect = 0.16
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +3

Query: 387 GDYALRARVSNNGSVSWIKRLDISTPVSMQLDNWPNDMQTCTFKFGSRMHNSDQNGXVID 566
           G +     V + GS  ++      +   M +  +P D Q C  KFGS  ++ +Q   V++
Sbjct: 102 GTFQTNVVVKHGGSCLYVPPGIFKSTCKMDITWFPFDDQHCDMKFGSWTYDGNQLDLVLN 161


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 37.1 bits (82), Expect = 2e-04
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 254 LQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNA 370
           L + W D  L WN  E+ G     ++  +LW+PDV++ N+
Sbjct: 56  LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNS 95



 Score = 27.5 bits (58), Expect = 0.16
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +3

Query: 387 GDYALRARVSNNGSVSWIKRLDISTPVSMQLDNWPNDMQTCTFKFGSRMHNSDQNGXVID 566
           G +     V + GS  ++      +   M +  +P D Q C  KFGS  ++ +Q   V++
Sbjct: 102 GTFQTNVVVKHGGSCLYVPPGIFKSTCKMDITWFPFDDQHCDMKFGSWTYDGNQLDLVLN 161


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 27.9 bits (59), Expect = 0.12
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +3

Query: 375 ATTAGDYALRARVSNNGSVSWIKRLDISTPVSMQLDNWPNDMQTCTFKFGS 527
           ATT+ ++    RV ++GS++   RL I+    M L   P D Q C  +  S
Sbjct: 140 ATTSNEFI---RVHHSGSITRSIRLTITASCPMNLQYLPMDRQLCHIEIES 187


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 26.6 bits (56), Expect = 0.27
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 396 ALRARVSNNGSVSWIKRLDISTPVSMQLDNWPND 497
           A+   +  N + SW + ++  + V M LDNW ND
Sbjct: 272 AIEGIIFFNLAKSWPQLIEKWSRVEMALDNWKND 305


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 11/49 (22%), Positives = 24/49 (48%)
 Frame = -2

Query: 216 MLACLKCRVRLTTILESGGESRSYVARSESIMRDSDVAFSHSAALAIAQ 70
           +++ L C +  T +L S GE+R ++   +     S  + S    + +A+
Sbjct: 228 VVSTLSCYLERTELLRSSGETRLFLTHRKPFHPASTQSLSRWIKMVLAE 276


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -3

Query: 443 LYPG-DGAVIRYTGAESVVPGGGC 375
           LY G DG+VI     E VV G GC
Sbjct: 348 LYLGSDGSVILKNYKEMVVVGCGC 371


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,604
Number of Sequences: 336
Number of extensions: 3762
Number of successful extensions: 22
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25651384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)