Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_E24
         (919 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.40 
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    27   2.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.9  
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    27   4.9  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    26   6.5  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +1

Query: 223 VRVHRANTGRSSNELDRQTTELERR 297
           +R H+ + GR+  ELDR+ T+L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1016

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -3

Query: 413  YTGAESVVPGGGCSPRLAVPRQASTSVPRTPAKCCSPTPLRSNS 282
            Y  ++ V   G  SP      +A+T+   TP    +PTP  +++
Sbjct: 915  YNPSQYVCSDGSLSPNTVTTTKATTTFTPTPTTTTTPTPTTTSA 958


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 16/48 (33%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
 Frame = -3

Query: 782 PXESPXPGXXXAXTRXRPPQPXXPGRVLR-XPXXGXFAXRXSXPPHXP 642
           P  S       A  + RPP P  P R  R  P  G  +   S PP  P
Sbjct: 294 PPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPP 341


>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 15/47 (31%), Positives = 28/47 (59%)
 Frame = -2

Query: 405 RGERSPRRWLQPAFSSTTSGLHKRSEDTSQVLQPHSPAFQLSRLSIQ 265
           RG RS +R    + +S++SG   +   TSQ+++  SP+ + + L +Q
Sbjct: 12  RGNRS-KRHQNLSDASSSSGSFSKKSSTSQLVRTGSPSVEPTALYLQ 57


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 402 RARVSNNGSVSWIKRLDISTPVSMQLDNWPNDMQTCTFKFGSRMHN 539
           RA +++   +  +KR DI    +   DNW ND+  C  + G  +H+
Sbjct: 588 RAVIAHMLELDPVKRYDIHRVFA---DNWINDISMCHMENGKVIHS 630


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,997,639
Number of Sequences: 5004
Number of extensions: 58045
Number of successful extensions: 174
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)