Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_E24
(919 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 34 0.18
07_03_1136 + 24218601-24218734,24218769-24219906 32 0.73
07_03_1747 + 29188568-29188715,29188793-29189541 31 1.7
03_05_0492 - 24874517-24874960,24875672-24875815,24876214-248762... 30 2.2
12_01_0524 - 4167867-4168445 29 3.9
07_01_0809 - 6347986-6348048,6348460-6348571,6348956-6349041 29 5.2
02_05_1022 + 33570664-33570976,33572206-33573440,33573873-335740... 29 5.2
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 29 6.8
01_01_0563 + 4142351-4144510,4145610-4147259,4147942-4148185,414... 29 6.8
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468... 28 9.0
09_04_0028 - 13928542-13929538,13929736-13929818 28 9.0
04_01_0530 - 6928528-6929500,6929514-6930964 28 9.0
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 28 9.0
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 33.9 bits (74), Expect = 0.18
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -1
Query: 325 HQPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQM-QGQVDYDFGVGG 161
H P AAA P VP++ P L + S GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 31.9 bits (69), Expect = 0.73
Identities = 21/74 (28%), Positives = 22/74 (29%)
Frame = +2
Query: 599 RGMWAGSVXXGAXALXXGXGAXXAXRMXPXXVPGGXXPXXXAGGAGAGXXRGXVXXPGSP 778
R + G GA A G G A P GG P GG G G G G
Sbjct: 145 RRVLGGGGGGGALARPPGGGRGGALGRPPGGGGGGGGPGRAPGGGGGGGGPGRAPGGGGG 204
Query: 779 AGXFAGXXXAXXCP 820
G G P
Sbjct: 205 GGGLGGGGGEGGAP 218
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 30.7 bits (66), Expect = 1.7
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +1
Query: 379 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSVLG 531
PPP TT++ V L TA + S + QF+C+ TTC + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260
>03_05_0492 -
24874517-24874960,24875672-24875815,24876214-24876282,
24876452-24876570,24878292-24878580
Length = 354
Score = 30.3 bits (65), Expect = 2.2
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = -3
Query: 464 WSANVQALY---PGDGAVIRYTGAESVVPGGGCSPRLAVPRQASTSVPRTPAK 315
W A Q LY + A +R G VVPGG + A P T+VP P +
Sbjct: 28 WWAGSQLLYGEASPEEAALRDGGQFQVVPGGRAALDPAAPEPEKTAVPAMPKR 80
>12_01_0524 - 4167867-4168445
Length = 192
Score = 29.5 bits (63), Expect = 3.9
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -1
Query: 322 QPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVPIVR 143
QPS+AA P + + + + YSH G + S + G + G GGG P V
Sbjct: 104 QPSSAAVAPLPSSTNLKSAVRSAMGSYSHSGTRRVHFGDSTVLG--EKAAGAGGGEPAV- 160
Query: 142 CEERVDHEGQ*C 107
EE + E + C
Sbjct: 161 VEEVEEEEEKEC 172
>07_01_0809 - 6347986-6348048,6348460-6348571,6348956-6349041
Length = 86
Score = 29.1 bits (62), Expect = 5.2
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = -3
Query: 404 AESVVPGGGCSPRLAVPRQASTSVPRTPAKCCSPTPLRSNSVVCRSNSFED 252
AE+ VP G P+++ + S + CCS +++ C FED
Sbjct: 2 AETSVPNLGMKPKIS--ERTSNTKATMGTSCCSYNTCEDSTIKCTMTQFED 50
>02_05_1022 +
33570664-33570976,33572206-33573440,33573873-33574013,
33574242-33574796,33574914-33575015
Length = 781
Score = 29.1 bits (62), Expect = 5.2
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = -3
Query: 443 LYPGDGAVIRYTGAESVVPGGGCSPRLAVPRQASTSVPRTPAKCCSPTPLRSNSVVCRSN 264
++PGDGA +T ++VP + R A A+T PA S P +++ + S
Sbjct: 234 MFPGDGATTTHTTCLTMVP-SSATARPAAKSTAATPERVFPATTASSIPSITSAAMVTSV 292
Query: 263 SFED 252
F +
Sbjct: 293 PFNE 296
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 28.7 bits (61), Expect = 6.8
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 223 VRVHRANTGRSSNELDRQTTELERRGVGLQHLAGVLGTL 339
V+ H R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>01_01_0563 + 4142351-4144510,4145610-4147259,4147942-4148185,
4148280-4148830
Length = 1534
Score = 28.7 bits (61), Expect = 6.8
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = -3
Query: 440 YPGDGAVIRYTGAESVVPGGGCSPRLAVPRQASTSVPRTPAKCCSPTPLRSNSVVCRSNS 261
Y GDG S+ G SPR +V ++ + +C +P LR+NSV R+ S
Sbjct: 1358 YVGDGRACESYDGGSIYSPTGYSPRFSVKTESPRAFDGL-ERCSTPRFLRTNSVK-RTAS 1415
Query: 260 F 258
F
Sbjct: 1416 F 1416
>09_04_0190 -
15443764-15443838,15445360-15445458,15446396-15446891,
15449436-15449479,15449999-15450104,15450243-15450314,
15450474-15450588,15451182-15451407
Length = 410
Score = 28.3 bits (60), Expect = 9.0
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +1
Query: 229 VHRANTGRSSNELDRQTTELERRGVG 306
V+ A +SS+ L ++TTE++R G+G
Sbjct: 371 VNEAKETKSSSSLPQKTTEMQRSGIG 396
>09_04_0028 - 13928542-13929538,13929736-13929818
Length = 359
Score = 28.3 bits (60), Expect = 9.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 303 GAAALGWCPRNACGGLTWYC*TRAATTAGDYALR 404
G AALGW R+A G L+ + TR D ++
Sbjct: 5 GTAALGWAARDASGHLSPFSFTRRVQEEDDVTIK 38
>04_01_0530 - 6928528-6929500,6929514-6930964
Length = 807
Score = 28.3 bits (60), Expect = 9.0
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +1
Query: 58 VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 198
+SP+LCY+ C RK+ +L+ + SGLPP++ S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 28.3 bits (60), Expect = 9.0
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Frame = -3
Query: 437 PGDGAVIRYTGAESVVPGGGC----SPRLAVPRQASTSVPRTPAKCCSPTP 297
P D +G+ PGGG +P P +S S TP C +PTP
Sbjct: 257 PSDTPPSPSSGSSPTTPGGGGGYTPTPSDTPPSPSSGSSRTTPGGCSTPTP 307
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,367,411
Number of Sequences: 37544
Number of extensions: 537712
Number of successful extensions: 1834
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1828
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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