Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_E24
(919 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 49 7e-08
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 48 1e-07
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 45 8e-07
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 44 1e-06
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 43 4e-06
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 42 1e-05
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 42 1e-05
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 42 1e-05
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 42 1e-05
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 42 1e-05
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 42 1e-05
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 42 1e-05
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 42 1e-05
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 42 1e-05
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 40 3e-05
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 40 3e-05
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 40 4e-05
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 39 7e-05
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 39 7e-05
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 38 1e-04
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 35 0.001
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 34 0.002
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 29 0.059
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 29 0.078
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 29 0.078
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 29 0.078
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 29 0.078
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 27 0.24
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 25 1.3
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 24 1.7
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 24 2.2
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 24 2.2
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 24 2.2
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 24 2.2
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 23 5.1
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 23 5.1
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 22 9.0
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 48.8 bits (111), Expect = 7e-08
Identities = 35/105 (33%), Positives = 49/105 (46%), Gaps = 8/105 (7%)
Frame = +2
Query: 77 IASAAECENATSLSLMIDSLLATYDRDSPPDSK----IVVNLTLHLRHA---NIRESEST 235
I SA C + D LL+ Y+R P S +VV L L L N+++ T
Sbjct: 9 ILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILT 68
Query: 236 VRIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 367
+ L+ W D + W+ E+G T L V SE +W PD+VL N
Sbjct: 69 TNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVLYN 111
Score = 27.9 bits (59), Expect = 0.14
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +3
Query: 402 RARVSNNGSVSWIKRLDISTPVSMQLDNWPNDMQTCTFKFGSRMHNSDQ 548
+A + G V W + + + +P D QTC KFGS ++ Q
Sbjct: 124 KAILHYTGKVLWTPPAIFKSSCEIDVRYFPFDQQTCFMKFGSWTYDGIQ 172
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 48.0 bits (109), Expect = 1e-07
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Frame = +2
Query: 95 CENATSLSLMIDS---LLATYDRDSPPDSKIV--VNLTLHLRHANIRESESTVRIQADLQ 259
C++ TS S + L YDRD P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 260 MNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVL 361
+ W L+W + E+ ++ V S +W PD+V+
Sbjct: 88 LMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIVM 122
Score = 24.2 bits (50), Expect = 1.7
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +3
Query: 411 VSNNGSVSWIKRLDISTPVSMQLDN--WPNDMQTCTFKFGSRMHNSDQ 548
V N+G++ + TPV + D+ WP D+ CT S H S++
Sbjct: 141 VFNSGTILCVP-FTTYTPVC-EYDHTWWPYDILNCTIHIASWSHGSNE 186
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 45.2 bits (102), Expect = 8e-07
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
Frame = +2
Query: 65 LTCAIASAAECENATSLSLMIDSLLATYDRDSPP----DSKIVVNLTLHLRH---ANIRE 223
++C +A + + D LL+ Y+R P ++ V + L L N++
Sbjct: 5 ISCLVAPFPGASANSEAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKN 64
Query: 224 SESTVRIQADLQMNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLN 367
T + ++ W D +L WN ++G T V SE +W PD+VL N
Sbjct: 65 QIMTTNVW--VEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYN 111
Score = 27.1 bits (57), Expect = 0.24
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 402 RARVSNNGSVSWIKRLDISTPVSMQLDNWPNDMQTCTFKFGS 527
+A + + G V W + + ++ +P D QTC KFGS
Sbjct: 124 KAILHHTGKVVWKPPAIYKSFCEIDVEYFPFDEQTCFMKFGS 165
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 44.4 bits (100), Expect = 1e-06
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Frame = +2
Query: 101 NATSLSLMIDSLLATYDRDSPPD---SKIVVNLTLHLRHAN-IRESESTVRIQADLQMNW 268
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 269 IDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 367
+D+RL++ G+ + + R+W+PD N
Sbjct: 62 VDRRLAFQGGKETLALSISMLARIWKPDTYFYN 94
Score = 35.1 bits (77), Expect = 0.001
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 408 RVSNNGSVSWIKRLDISTPVSMQLDNWPNDMQTCTFKFGS 527
R+ +G V + RL I M L+N+P D Q C +FGS
Sbjct: 111 RLYQDGRVLYSSRLTIKAGCPMNLENFPMDTQRCPLQFGS 150
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 42.7 bits (96), Expect = 4e-06
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Frame = +2
Query: 95 CENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLHLR-------HANIRESESTVRIQAD 253
C + D LL+ Y++ P + LT+ ++ N++ T +
Sbjct: 19 CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLW-- 76
Query: 254 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 367
++ +W D +L W+ E+G L V S+ +WRPD+VL N
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYN 115
Score = 31.5 bits (68), Expect = 0.011
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +3
Query: 396 ALRARVSNNGSVSWIKRLDISTPVSMQLDNWPNDMQTCTFKFGSRMHNSDQ 548
A +A ++ G V W + + ++ +P D QTC KFGS ++ Q
Sbjct: 126 ATKATLNYTGRVEWKPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQ 176
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 41.5 bits (93), Expect = 1e-05
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 212 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNA 370
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNS 78
Score = 28.3 bits (60), Expect = 0.10
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +3
Query: 387 GDYALRARVSNNGSVSWIKRLDISTPVSMQLDNWPNDMQTCTFKFGSRMHNSDQNGXVI 563
G Y V+++GS ++ + M + +P D Q C KFGS ++ +Q V+
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKMDVAWFPFDDQHCDMKFGSWTYDGNQVDLVL 143
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 41.5 bits (93), Expect = 1e-05
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 212 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNA 370
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNS 78
Score = 27.1 bits (57), Expect = 0.24
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +3
Query: 387 GDYALRARVSNNGSVSWIKRLDISTPVSMQLDNWPNDMQTCTFKFGSRMHNSDQNGXVI 563
G Y V+++GS ++ + + + +P D Q C KFGS ++ +Q V+
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKIDIAWFPFDDQHCDMKFGSWTYDGNQVDLVL 143
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 41.5 bits (93), Expect = 1e-05
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 212 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNA 370
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNS 78
Score = 27.5 bits (58), Expect = 0.18
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +3
Query: 387 GDYALRARVSNNGSVSWIKRLDISTPVSMQLDNWPNDMQTCTFKFGSRMHNSDQNGXVI 563
G Y V+++GS ++ + + + +P D Q C KFGS ++ +Q V+
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKIDITWFPFDDQHCDMKFGSWTYDGNQVDLVL 143
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 41.5 bits (93), Expect = 1e-05
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 212 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNA 370
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNS 78
Score = 27.1 bits (57), Expect = 0.24
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +3
Query: 387 GDYALRARVSNNGSVSWIKRLDISTPVSMQLDNWPNDMQTCTFKFGSRMHNSDQNGXVI 563
G Y V+++GS ++ + + + +P D Q C KFGS ++ +Q V+
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFGSTCKIDIAWFPFDDQHCDMKFGSWTYDGNQVDLVL 143
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 41.5 bits (93), Expect = 1e-05
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 212 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNA 370
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNS 78
Score = 28.7 bits (61), Expect = 0.078
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +3
Query: 387 GDYALRARVSNNGSVSWIKRLDISTPVSMQLDNWPNDMQTCTFKFGSRMHNSDQNGXVI 563
G Y V+++GS ++ + M + +P D Q C KFGS ++ +Q V+
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKMDIAWFPFDDQHCDMKFGSWTYDGNQVDLVL 143
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 41.5 bits (93), Expect = 1e-05
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 212 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNA 370
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNS 78
Score = 29.5 bits (63), Expect = 0.045
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +3
Query: 387 GDYALRARVSNNGSVSWIKRLDISTPVSMQLDNWPNDMQTCTFKFGSRMHNSDQNGXVI 563
G Y V++NGS ++ + + + +P D Q C KFGS ++ +Q V+
Sbjct: 85 GTYQTSVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCDMKFGSWTYDGNQVDLVL 143
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 41.5 bits (93), Expect = 1e-05
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 212 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNA 370
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNS 146
Score = 29.9 bits (64), Expect = 0.034
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +3
Query: 387 GDYALRARVSNNGSVSWIKRLDISTPVSMQLDNWPNDMQTCTFKFGSRMHNSDQNGXVI 563
G Y V++NGS ++ + + + +P D Q C KFGS ++ +Q V+
Sbjct: 153 GTYQTNVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCDMKFGSWTYDGNQVDLVL 211
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 41.5 bits (93), Expect = 1e-05
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 212 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNA 370
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNS 146
Score = 29.9 bits (64), Expect = 0.034
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +3
Query: 387 GDYALRARVSNNGSVSWIKRLDISTPVSMQLDNWPNDMQTCTFKFGSRMHNSDQNGXVI 563
G Y V++NGS ++ + + + +P D Q C KFGS ++ +Q V+
Sbjct: 153 GTYQTNVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCDMKFGSWTYDGNQVDLVL 211
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 41.5 bits (93), Expect = 1e-05
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Frame = +2
Query: 122 MIDSLLATYDRDSPPDSKIVVNLTLHLR-------HANIRESESTVRIQADLQMNWIDKR 280
+ D LL+ Y+R P LT+ L N++ T + ++ W D +
Sbjct: 37 LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVW--VEQRWNDYK 94
Query: 281 LSWNAGEWGCSTWL-VSSERLWRPDVVLLN 367
L WN E+G L V SE +W PD+VL N
Sbjct: 95 LKWNPEEYGGVEMLYVPSENIWLPDIVLYN 124
Score = 32.3 bits (70), Expect = 0.006
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 402 RARVSNNGSVSWIKRLDISTPVSMQLDNWPNDMQTCTFKFGSRMHNSDQ 548
+A + G VSW + + ++ +P D Q+C KFGS +N Q
Sbjct: 137 KATLKYTGDVSWKPPAIYKSSCEINVEYFPFDEQSCIMKFGSWTYNGAQ 185
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 39.9 bits (89), Expect = 3e-05
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Frame = +2
Query: 122 MIDSLLATYDRDSPP--DSKIVVNLTLHLRHANIRESESTVRIQAD---LQMNWIDKRLS 286
+ D LL+ Y++ P ++ V+ + + L+ + + + +I ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 287 WNAGEWGCSTWL-VSSERLWRPDVVLLN 367
W E+G L V S+ +WRPD+VL N
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYN 119
Score = 29.5 bits (63), Expect = 0.045
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 402 RARVSNNGSVSWIKRLDISTPVSMQLDNWPNDMQTCTFKFGS 527
+A V +G V W + S+ ++ +P D+QTC K GS
Sbjct: 132 KATVYYSGLVVWQPPAVYKSSCSIDVEFFPYDVQTCVLKLGS 173
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 39.9 bits (89), Expect = 3e-05
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Frame = +2
Query: 122 MIDSLLATYDRDSPP--DSKIVVNLTLHLRHANIRESESTVRIQAD---LQMNWIDKRLS 286
+ D LL+ Y++ P ++ V+ + + L+ + + + +I ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 287 WNAGEWGCSTWL-VSSERLWRPDVVLLN 367
W E+G L V S+ +WRPD+VL N
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYN 119
Score = 31.5 bits (68), Expect = 0.011
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 396 ALRARVSNNGSVSWIKRLDISTPVSMQLDNWPNDMQTCTFKFGS 527
A +A + + G V W + + ++ +P D QTC KFGS
Sbjct: 130 ATKATIYHQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGS 173
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 39.5 bits (88), Expect = 4e-05
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +2
Query: 176 IVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPD 352
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 353 VVLLN 367
+L N
Sbjct: 92 TILYN 96
Score = 26.2 bits (55), Expect = 0.42
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +3
Query: 411 VSNNGSVSWIKRLDISTPVSMQLDNWPNDMQTCTFKFGSRMHNSDQ 548
VS+ G V W+ + + ++ +P D Q C K+ S ++ Q
Sbjct: 113 VSHTGEVVWLSHGIFRSSCDIDVEFFPFDEQRCVLKWASWTYDGYQ 158
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 38.7 bits (86), Expect = 7e-05
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +2
Query: 173 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWR 346
K+ VN L ++ N+ E ++ L+ W D +L W+ ++ G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 347 PDVVLLN 367
PD+VL N
Sbjct: 111 PDIVLFN 117
Score = 37.1 bits (82), Expect = 2e-04
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +3
Query: 393 YALRARVSNNGSVSWIKRLDISTPVSMQLDNWPNDMQTCTFKFGSRMHNSDQ 548
Y + NG V W+ + ++ + +P D QTC KFGS N DQ
Sbjct: 127 YKSNVLIYPNGDVLWVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFNGDQ 178
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 38.7 bits (86), Expect = 7e-05
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Frame = +2
Query: 98 ENATSLSLMIDSLLATYDRDSPPDS--KIVVNLTLHL--RHANIRESESTVRIQADLQMN 265
++ T+L + L YD + P S +I N+T+ L + + S + + + + +
Sbjct: 39 DHPTTLLKLKRYLFCEYDPNVRPISSHQIANNVTMQLLPKLMEFDDWTSVMELHSWMTLM 98
Query: 266 WIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAG 373
W D LSW ++ G + V S+ +W PD+ + N+G
Sbjct: 99 WTDSHLSWKPSDFDGINYIYVKSDDIWVPDISVYNSG 135
Score = 36.3 bits (80), Expect = 4e-04
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +3
Query: 411 VSNNGSVSWIKRLDISTPVSMQLDNWPNDMQTCTFKFGSRMHNSDQNGXVIDKR 572
V ++GSVS + + + +WP D C FGS +H+ ++ +DK+
Sbjct: 151 VFSSGSVSCVPSVKHVAKCATDFSSWPYDTHRCRINFGSWVHSGEEVNIFLDKK 204
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 37.9 bits (84), Expect = 1e-04
Identities = 25/112 (22%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Frame = +2
Query: 53 YXFLLTCAIASAAECENATSLSLMIDSLLATYDRDSPP----DSKIVVNLTLHLRHA-NI 217
+ + A+A++ + +++ LL TY+ P +V++ L L ++
Sbjct: 4 WTLMAAIALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDV 63
Query: 218 RESESTVRIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNA 370
E + L++ W D + WN ++G L + RLW+PDV++ N+
Sbjct: 64 DEKNQLLITNLWLKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNS 115
Score = 28.7 bits (61), Expect = 0.078
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +3
Query: 387 GDYALRARVSNNGSVSWIKRLDISTPVSMQLDNWPNDMQTCTFKFGSRMHNSDQ 548
G Y V NNG+ ++ + + + +P D Q C KFGS ++ Q
Sbjct: 122 GTYPTNVVVKNNGTCLYVPPGIFKSTCKIDITWFPFDDQRCEMKFGSWTYDGFQ 175
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 35.1 bits (77), Expect = 0.001
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Frame = +2
Query: 122 MIDSLLATYDRDSPP------DSKIVVNLTLHLRH-ANIRESESTVRIQADLQMNWIDKR 280
++D++L YD P D +V + L +R A I + + +Q + W+D+R
Sbjct: 35 VLDNILGGYDARIRPSGENATDGPAIVRVNLFVRSIATISDIKMEYSVQLTFREQWLDER 94
Query: 281 LSWN--AGEWGCSTWLVSSERLWRPDVVLLNAGCNH 382
L +N G T L + R+W PD+ N H
Sbjct: 95 LRFNDFGGRLKYLT-LTDASRVWMPDLFFSNEKEGH 129
Score = 29.1 bits (62), Expect = 0.059
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 408 RVSNNGSVSWIKRLDISTPVSMQLDNWPNDMQTCTFKFGS 527
R+ NGSV + R+ ++ M L +P D Q C+ + S
Sbjct: 141 RIFPNGSVLYSIRISLTLSCPMNLKLYPLDRQVCSLRMAS 180
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 34.3 bits (75), Expect = 0.002
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Frame = +2
Query: 110 SLSLMIDSLLATYDRDSPPD----SKIVVNLTLHLRHAN-IRESESTVRIQADLQMNWID 274
++++++++LL Y+ + P + VV + +R + E + + + +W D
Sbjct: 36 NITMVLENLLMNYENNQLPTHGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSWRD 95
Query: 275 KRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 367
RLS+ S + ER+WRPD N
Sbjct: 96 SRLSFLGPIKSLSLSIKMLERIWRPDTYFYN 126
Score = 34.3 bits (75), Expect = 0.002
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 408 RVSNNGSVSWIKRLDISTPVSMQLDNWPNDMQTCTFKFGS 527
R+S +G + + RL I M+L N+P D Q+C GS
Sbjct: 143 RISQDGDILYSMRLTIKAKCPMELRNFPMDRQSCPLILGS 182
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 29.1 bits (62), Expect = 0.059
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 408 RVSNNGSVSWIKRLDISTPVSMQLDNWPNDMQTCTFKFGS 527
R+ NGSV + R+ ++ M L +P D Q C+ + S
Sbjct: 141 RIFPNGSVLYSIRISLTLSCPMNLKLYPLDRQVCSLRMAS 180
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 28.7 bits (61), Expect = 0.078
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 408 RVSNNGSVSWIKRLDISTPVSMQLDNWPNDMQTCTFKFGS 527
R+S +GSV++ R + M L +P D Q CT + S
Sbjct: 142 RLSGDGSVTYGMRFTTTLACMMDLHYYPLDSQNCTVEIES 181
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 28.7 bits (61), Expect = 0.078
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +3
Query: 375 ATTAGDYALRARVSNNGSVSWIKRLDISTPVSMQLDNWPNDMQTCTFKFGS 527
ATT+ ++ R+ ++GS++ RL I+ M L +P D Q C + S
Sbjct: 111 ATTSNEFI---RIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIES 158
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 28.7 bits (61), Expect = 0.078
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +3
Query: 375 ATTAGDYALRARVSNNGSVSWIKRLDISTPVSMQLDNWPNDMQTCTFKFGS 527
ATT+ ++ R+ ++GS++ RL I+ M L +P D Q C + S
Sbjct: 111 ATTSNEFI---RIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIES 158
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 28.7 bits (61), Expect = 0.078
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +3
Query: 375 ATTAGDYALRARVSNNGSVSWIKRLDISTPVSMQLDNWPNDMQTCTFKFGS 527
ATT+ ++ R+ ++GS++ RL I+ M L +P D Q C + S
Sbjct: 50 ATTSNEFI---RIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIES 97
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 27.1 bits (57), Expect = 0.24
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 411 VSNNGSVSWIKRLDISTPVSMQLDNWPNDMQTCTFKFGSRMHN 539
+ +G V RL + ++L+ +P D+Q C F S HN
Sbjct: 124 IDPSGMVRLNTRLQATLNCGLRLEKFPFDVQECPLIFESWTHN 166
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 24.6 bits (51), Expect = 1.3
Identities = 8/36 (22%), Positives = 20/36 (55%)
Frame = +3
Query: 435 WIKRLDISTPVSMQLDNWPNDMQTCTFKFGSRMHNS 542
++ +L + +M+ +++P+D Q C+ S H +
Sbjct: 122 YMSKLTLVLSCAMKFESYPHDTQICSMMIESLSHTT 157
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 24.2 bits (50), Expect = 1.7
Identities = 9/41 (21%), Positives = 21/41 (51%)
Frame = +3
Query: 426 SVSWIKRLDISTPVSMQLDNWPNDMQTCTFKFGSRMHNSDQ 548
++ ++ +L + +M +P+D Q C + S H +D+
Sbjct: 150 TILYMVKLTLKLSCAMNFLIYPHDTQECKLQMESLSHTTDE 190
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 23.8 bits (49), Expect = 2.2
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +3
Query: 408 RVSNNGSVSWIKRLDISTPVSMQLDNWPNDMQTCTFKFGS 527
R+ NG+V+++ R + +L+ +P D C+F S
Sbjct: 167 RIYRNGTVNYLMRRHLILSCQGRLNIFPFDDPLCSFAIES 206
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 23.8 bits (49), Expect = 2.2
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +3
Query: 408 RVSNNGSVSWIKRLDISTPVSMQLDNWPNDMQTCTFKFGS 527
R+ NG+V+++ R + +L+ +P D C+F S
Sbjct: 167 RIYRNGTVNYLMRRHLILSCQGRLNIFPFDDPLCSFAIES 206
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 23.8 bits (49), Expect = 2.2
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +3
Query: 408 RVSNNGSVSWIKRLDISTPVSMQLDNWPNDMQTCTFKFGS 527
R+ NG+V+++ R + +L+ +P D C+F S
Sbjct: 218 RIYRNGTVNYLMRRHLILSCQGRLNIFPFDDPLCSFAIES 257
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 23.8 bits (49), Expect = 2.2
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +3
Query: 408 RVSNNGSVSWIKRLDISTPVSMQLDNWPNDMQTCTFKFGS 527
R+ NG+V+++ R + +L+ +P D C+F S
Sbjct: 167 RIYRNGTVNYLMRRHLILSCQGRLNIFPFDDPLCSFAIES 206
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 22.6 bits (46), Expect = 5.1
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Frame = +2
Query: 176 IVVNLTLHLRHAN-IRESESTVRIQADLQMNWIDKRLS-----WNAGEWGCSTWLVSSER 337
++V+ + + N I + R+ ++ +WI+ RL + G+ + +
Sbjct: 11 VLVDFNIFVADINSINVEDMDFRVDMFVRQSWIESRLDMPDYIFEEGDDYVTLPPEFFDS 70
Query: 338 LWRPDVVLLNA 370
LW+PD LNA
Sbjct: 71 LWQPDPYFLNA 81
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 22.6 bits (46), Expect = 5.1
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 319 PSAAAPLPCVPTQS 278
PSA AP+P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 21.8 bits (44), Expect = 9.0
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -1
Query: 118 GQ*CCVFAFCRTSYSTSEEKXVTR 47
G+ CC F T Y + K VT+
Sbjct: 602 GEQCCWHCFNCTQYQIRDHKDVTQ 625
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,251
Number of Sequences: 438
Number of extensions: 4996
Number of successful extensions: 90
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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