Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_E24
         (919 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    31   1.4  
At1g60220.1 68414.m06782 Ulp1 protease family protein contains P...    29   4.3  
At5g54650.2 68418.m06805 formin homology 2 domain-containing pro...    28   10.0 
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro...    28   10.0 
At4g02590.1 68417.m00353 basic helix-loop-helix (bHLH) family pr...    28   10.0 
At3g24540.1 68416.m03082 protein kinase family protein contains ...    28   10.0 

>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/63 (26%), Positives = 21/63 (33%)
 Frame = -3

Query: 782 PXESPXPGXXXAXTRXRPPQPXXPGRVLRXPXXGXFAXRXSXPPHXPGLXHXTGQNPPTS 603
           P  SP P      +   PP P  P  V   P    ++     P   P   + T   PP  
Sbjct: 483 PPPSPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPVYSSPPPPPSPAPTPVYCTRPPPPPP 542

Query: 602 HGP 594
           H P
Sbjct: 543 HSP 545


>At1g60220.1 68414.m06782 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 604

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
 Frame = -2

Query: 402 GERSPRRWLQPAFSSTTSGLHKRSEDT-----SQVLQPHSPAFQLSRLSIQFI*RSACIR 238
           G  +PR W      S +S   K+SEDT      +  QP + A Q + L  + +    C  
Sbjct: 297 GHETPREWSWEKSPSQSSRRRKKSEDTVINVDEEEAQPSTVAEQAAELP-EGLQEDICYP 355

Query: 237 TVDSDSRMLACLK 199
           T D    +  CLK
Sbjct: 356 TRDDPHFVQVCLK 368


>At5g54650.2 68418.m06805 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 900

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -3

Query: 389 PGGGCSPRLAVPRQASTSVPRTPAKCCSPTPLRSNSVVCRS 267
           PG   SP  + P + S   PR P +  SP P +S+    RS
Sbjct: 142 PGSSPSPSPSRPPKRSRGPPRPPTRPKSPPPRKSSFPPSRS 182


>At5g54650.1 68418.m06804 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 900

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -3

Query: 389 PGGGCSPRLAVPRQASTSVPRTPAKCCSPTPLRSNSVVCRS 267
           PG   SP  + P + S   PR P +  SP P +S+    RS
Sbjct: 142 PGSSPSPSPSRPPKRSRGPPRPPTRPKSPPPRKSSFPPSRS 182


>At4g02590.1 68417.m00353 basic helix-loop-helix (bHLH) family
           protein similar to A. thaliana putative protein
           F6I18.110, GenBank accession number 2980768
          Length = 310

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -1

Query: 229 LGLTNVSMSQMQGQVDYDFGVGGGVPIVRCEERVDHEG 116
           LGL N S S   G    D G+GGG P +  +     EG
Sbjct: 24  LGLPNFSASSAAGLSGVDGGLGGGAPPMMLQLGSGEEG 61


>At3g24540.1 68416.m03082 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 509

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 136 PRNVRSGLPPRLQNRSQPDPA 198
           PR+  +  PPRL NR+ P PA
Sbjct: 75  PRSPSTSTPPRLGNRNPPPPA 95


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,922,342
Number of Sequences: 28952
Number of extensions: 358900
Number of successful extensions: 1016
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2178500352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)