Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_E23
(891 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 282 3e-76
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 279 3e-75
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 6.6
09_06_0103 + 20873310-20873382,20873530-20873735 29 6.6
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789... 29 6.6
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119... 28 8.7
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 28 8.7
01_06_0900 - 32841880-32842078,32842179-32842300,32842621-328428... 28 8.7
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 282 bits (691), Expect = 3e-76
Identities = 131/216 (60%), Positives = 164/216 (75%)
Frame = +3
Query: 54 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTGE 233
++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG ++INL +T E
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 234 KLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAF 413
KL LAAR +VAIENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120
Query: 414 REPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 593
EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K +SIG ++W
Sbjct: 121 SEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFW 180
Query: 594 LLAREVLXLRGVLPRDQRWDVVVDLFFYRDPEESEK 701
LLAR VL +RG + +WDV+VDLFFYRDPEE+++
Sbjct: 181 LLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKE 216
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 279 bits (683), Expect = 3e-75
Identities = 128/205 (62%), Positives = 158/205 (77%)
Frame = +3
Query: 87 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTGEKLVLAARAVVA 266
L+ E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL +T EKL LAAR +VA
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 267 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 446
IENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDP 131
Query: 447 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLXLRG 626
DHQPI E++ NIP IA C+TDSP+R+VDI IP N K SIG ++WLLAR VL +RG
Sbjct: 132 RTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRG 191
Query: 627 VLPRDQRWDVVVDLFFYRDPEESEK 701
+ +WDV+VDLFFYRDPEE+++
Sbjct: 192 TILPGHKWDVMVDLFFYRDPEEAKE 216
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3
Query: 154 TFSAPRWVVAASILVTSSSLRASTSNP 74
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>09_06_0103 + 20873310-20873382,20873530-20873735
Length = 92
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +2
Query: 332 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 439
+CR+ RC YC G RC + DPS ++ +C+
Sbjct: 45 LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83
>01_07_0027 -
40578075-40578437,40578647-40578767,40578852-40578952,
40579176-40579451,40579485-40579805,40581609-40581623,
40581969-40582295,40583287-40583538
Length = 591
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -2
Query: 683 VTVEEQINHNIPALVTGKHTTKXQHFTCQQPPHQTNRVG 567
V + Q NIP LVT TTK + F PPH +G
Sbjct: 462 VNNKPQAKPNIPRLVTSTSTTKLERF---PPPHLDASIG 497
>08_01_0152 -
1190358-1190462,1190648-1190765,1191134-1192691,
1193338-1193530
Length = 657
Score = 28.3 bits (60), Expect = 8.7
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -1
Query: 336 QTSVQHADRRAVMR*RTHQRGSRWLRQHEQPEQVFPRYDAS*SHGYHQHVVC 181
+ SV + D+ ++ RT RGS L QPE + PRY+ H VC
Sbjct: 269 KNSVNNDDKPMLVSIRTKGRGSSTLPSIAQPEPL-PRYNKHWRRKAHSMCVC 319
>01_06_0902 +
32853708-32853739,32854787-32855596,32856094-32856157,
32856375-32856446
Length = 325
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 161 PDGDLCLQTTC*WYPCDQLASYRGKTCSGCSCCRSH 268
P +C+ T C C K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300
>01_06_0900 -
32841880-32842078,32842179-32842300,32842621-32842841,
32843086-32843224,32843350-32843576,32843677-32843788,
32843863-32844063,32845349-32845525
Length = 465
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = -1
Query: 807 YFSHEPWSSVSFQFHDRSXTXGLAVPQPVPWLVVHPFHFLQGHGRR 670
Y W F +RS T L V PW + +H+++G R
Sbjct: 288 YTPQYKWLEAEFPKVNRSETPWLIVLLHAPWYNSYNYHYMEGESMR 333
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,984,962
Number of Sequences: 37544
Number of extensions: 564567
Number of successful extensions: 1361
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1361
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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