Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_E23
         (891 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...   279   2e-75
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...   272   2e-73
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...   250   1e-66
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP...    32   0.44 
At2g22340.1 68415.m02651 hypothetical protein                          31   0.78 
At1g52940.1 68414.m05987 calcineurin-like phosphoesterase family...    31   0.78 
At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   2.4  
At4g26590.1 68417.m03833 oligopeptide transporter OPT family pro...    29   4.1  
At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin fa...    29   5.5  
At2g34150.1 68415.m04180 expressed protein                             29   5.5  
At1g11980.1 68414.m01384 ubiquitin family protein similar to Cha...    28   7.2  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score =  279 bits (684), Expect = 2e-75
 Identities = 127/206 (61%), Positives = 157/206 (76%)
 Frame = +3

Query: 87  LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTGEKLVLAARAVVA 266
           L+  E DV  M AA  HLG +N N+QME YV+KRR DG ++ NL +T EKL +AAR +VA
Sbjct: 12  LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71

Query: 267 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 446
           IENP D+ V S+RP+GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72  IENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDP 131

Query: 447 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLXLRG 626
             DHQPI E +  NIP+IA C+TDSP+RFVDI IP N K  HSIG ++WLLAR VL +RG
Sbjct: 132 RTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 191

Query: 627 VLPRDQRWDVVVDLFFYRDPEESEKD 704
            +   Q+WDV+VDLFFYR+PEE++ +
Sbjct: 192 TIAAGQKWDVMVDLFFYREPEETKPE 217


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score =  272 bits (668), Expect = 2e-73
 Identities = 123/202 (60%), Positives = 155/202 (76%)
 Frame = +3

Query: 99  EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTGEKLVLAARAVVAIENP 278
           E D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +T +KL +AAR +VAIENP
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76

Query: 279 ADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDH 458
            D+ V S+RP+GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  DH
Sbjct: 77  KDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDH 136

Query: 459 QPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLXLRGVLPR 638
           QPI E +  NIP IA C+TDSP+ FVDI IP N K  HSIG ++WLLAR VL +RG +  
Sbjct: 137 QPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILA 196

Query: 639 DQRWDVVVDLFFYRDPEESEKD 704
            Q+WDV+VDLFFYR+PEE++++
Sbjct: 197 AQKWDVMVDLFFYREPEEAKQE 218


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score =  250 bits (611), Expect = 1e-66
 Identities = 114/189 (60%), Positives = 142/189 (75%)
 Frame = +3

Query: 99  EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTGEKLVLAARAVVAIENP 278
           E D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +T +KL +AAR +VAIENP
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76

Query: 279 ADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDH 458
            D+ V S+RP+GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  DH
Sbjct: 77  KDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDH 136

Query: 459 QPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLXLRGVLPR 638
           QPI E +  NIP IA C+TDSP+ FVDI IP N K  HSIG ++WLLAR VL +RG +  
Sbjct: 137 QPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILA 196

Query: 639 DQRWDVVVD 665
            Q+WDV+V+
Sbjct: 197 AQKWDVMVN 205


>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
           identical to SP|Q9GCB9 Mitochondrial ribosomal protein
           S2 {Arabidopsis thaliana}; contains Pfam profile
           PF00318: ribosomal protein S2
          Length = 219

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 420 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD-IAIPCNTKSS 569
           P  ++V D  +    I EAS + IPV+A+ + + PL F + I  P   + S
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPARDS 181


>At2g22340.1 68415.m02651 hypothetical protein
          Length = 358

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +2

Query: 137 SWGRKC*LPDGDLCLQTTC*WYPCDQLASYRGKTCSGCSC 256
           SW     LP+GD  +Q  C WY   +  S  G+  +   C
Sbjct: 188 SWTEASLLPEGDCFIQLNCLWYKPKEDTSVMGRKMASSDC 227


>At1g52940.1 68414.m05987 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 396

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -1

Query: 819 SQRAYFSHEPWSSVSFQFHDRSXTXGLAVPQPVPWLVVHPFHFLQGHGRR 670
           SQ  Y     W    F+  +RS T  L V    PW   + +H+++G   R
Sbjct: 219 SQNKYTPQNSWLQDEFKKVNRSETPWLIVLVHAPWYNSNNYHYMEGESMR 268


>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 375 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 476
           TP   TNQ++ A  E     +LDP     PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653


>At4g26590.1 68417.m03833 oligopeptide transporter OPT family
           protein similar to SP|P40900 Sexual differentiation
           process protein isp4 {Schizosaccharomyces pombe};
           contains Pfam profile PF03169: OPT oligopeptide
           transporter protein
          Length = 753

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 564 SSHSIGLMWWLLAR-EVLXLRGVLPRDQRWDVVVDLFFY 677
           S+ S G  WWLL+  E +    +LP+   W    D+ FY
Sbjct: 555 STVSFGTTWWLLSSVENICNTDMLPKSSPWTCPGDVVFY 593


>At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin
           family protein contains Pfam domain, PF01190: Pollen
           proteins Ole e I family
          Length = 146

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +3

Query: 516 DSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLXLRGVLPRDQRWD 653
           D  L   ++A+ C TKS   +    +  ++ V  +   +P  +RWD
Sbjct: 49  DHVLEGAEVAVLCITKSGEVVNYQAFTNSKGVYTVAETMPESERWD 94


>At2g34150.1 68415.m04180 expressed protein
          Length = 700

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = -2

Query: 548 DSNVHKS*WGVCVAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTW 378
           D  +H+  W      S   +     FSN L  +  +Q +QE+   E S D  S  TW
Sbjct: 308 DELIHQDPWAASEISSGTHSYSN-GFSNPLYDISGIQEHQESEEVESSCDTESIKTW 363


>At1g11980.1 68414.m01384 ubiquitin family protein similar to Chain
           A, Structure Of Ubiquitin-Like Protein, Rub1 GI:6729726
           from [Arabidopsis thaliana]
          Length = 78

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +2

Query: 203 PCDQLASYRGKTCSGCSCCRSHREPR*CVRHLITALRSACC 325
           P  Q   Y GK  +     + +   R  V HL+ ALR  CC
Sbjct: 38  PVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGGCC 78


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,452,679
Number of Sequences: 28952
Number of extensions: 429055
Number of successful extensions: 913
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2090971320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)