Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_E22
(854 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42548| Best HMM Match : DNA_binding_1 (HMM E-Value=5.2) 48 7e-06
SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0) 45 9e-05
SB_19326| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_11184| Best HMM Match : CN_hydrolase (HMM E-Value=4.4e-10) 36 0.032
SB_34841| Best HMM Match : ResIII (HMM E-Value=1.6) 31 1.2
SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022) 30 2.8
SB_27173| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_24587| Best HMM Match : ResIII (HMM E-Value=0.82) 29 4.8
SB_47836| Best HMM Match : F5_F8_type_C (HMM E-Value=0.022) 29 6.4
SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.4
SB_39061| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_18553| Best HMM Match : fn3 (HMM E-Value=0.25) 28 8.4
SB_15536| Best HMM Match : MdcD (HMM E-Value=3.9) 28 8.4
SB_9151| Best HMM Match : WAP (HMM E-Value=0.045) 28 8.4
>SB_42548| Best HMM Match : DNA_binding_1 (HMM E-Value=5.2)
Length = 101
Score = 48.4 bits (110), Expect = 7e-06
Identities = 26/92 (28%), Positives = 44/92 (47%)
Frame = +3
Query: 60 MENETHSLESIINNNLTGRDLEEFNRIHFGRRNNLEIKLKESSIXXXXXXXXXXXXXXFP 239
M E SL + NL DL+E RI +G + ++ L +++
Sbjct: 1 MAAEFESLNKTLEKNLPAEDLKEVKRILYGNPVS-DLSLPAAAVSVAAELDFELAGYKID 59
Query: 240 AKDEQTRPPRIVKVGIIQHSIAVPTDRPVNEQ 335
A E+ R PR+V++G +Q+ I PT+ P+ +Q
Sbjct: 60 AAAEELRQPRLVRIGAVQNKIVEPTNMPIAKQ 91
>SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0)
Length = 242
Score = 44.8 bits (101), Expect = 9e-05
Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 6/170 (3%)
Frame = +3
Query: 270 IVKVGIIQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQELWNMPFAFCTR 449
+ ++G++Q +AV ++ N Q+ K+K+ + G I+ E +N P+
Sbjct: 5 VFRIGLVQ--LAVTANKLQNLQRAR--EKIKEAVAA----GAKIVALPECFNSPYG---- 52
Query: 450 EKQPWCEFAESAEDGPTTTFLRELAIKYAMVIVS-SILERDEKHSDILWNTAVVISDTGN 626
Q + ++AE G ++ L E+A + IV SI ER L+NT++ +GN
Sbjct: 53 -TQYFKDYAEEIP-GESSNMLAEVAKETGAYIVGGSIPERASNRK--LYNTSLSYDPSGN 108
Query: 627 VIGKHRKNH-----IPXVGDFNESNYYMERYTGHPVFATXYGKIAVNIXF 761
++GKHRK H +P F ES + + T Y KI + I +
Sbjct: 109 LMGKHRKIHLFDIDVPGKIRFQESE-VLSPGENLTILDTEYCKIGIGICY 157
>SB_19326| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 41.1 bits (92), Expect = 0.001
Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 1/130 (0%)
Frame = +3
Query: 261 PPRIVKVGIIQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQELWNMPFAF 440
P + ++G++Q +AV ++ N Q+ K+K+ + G I+ E +N P+
Sbjct: 4 PILVFRIGLVQ--LAVTANKLQNLQRAR--EKIKEAVAA----GAKIVALPECFNSPYG- 54
Query: 441 CTREKQPWCEFAESAEDGPTTTFLRELAIKYAMVIVS-SILERDEKHSDILWNTAVVISD 617
Q + ++AE G ++ L E+A + IV SI ER L+NT++
Sbjct: 55 ----TQYFKDYAEEIP-GESSNMLAEVAKETGAYIVGGSIPERASNGK--LYNTSLSYDP 107
Query: 618 TGNVIGKHRK 647
+GN++GKHRK
Sbjct: 108 SGNLMGKHRK 117
>SB_11184| Best HMM Match : CN_hydrolase (HMM E-Value=4.4e-10)
Length = 128
Score = 36.3 bits (80), Expect = 0.032
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 8/105 (7%)
Frame = +3
Query: 471 FAESAED--GPTTTFLRELAIKYAMVIVS-SILERDEKHSDILWNTAVVISDTGNVIGKH 641
F + AE+ G ++ L E+A + IV SI ER L+NT++ +GN++GKH
Sbjct: 12 FKDYAEEIPGESSNMLAEVAKETGAYIVGGSIPERASNGK--LYNTSLSYDPSGNLMGKH 69
Query: 642 RKNH-----IPXVGDFNESNYYMERYTGHPVFATXYGKIAVNIXF 761
RK H +P F ES + + T Y KI + I +
Sbjct: 70 RKIHLFDIDVPGKIRFQESE-VLSPGENLTILDTEYCKIGIGICY 113
>SB_34841| Best HMM Match : ResIII (HMM E-Value=1.6)
Length = 949
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +3
Query: 240 AKDEQTRPPRIVKVGIIQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 377
A D + P VK H + +PT++P+ E + + +++K+ ++ +V
Sbjct: 762 AHDHRNNPSLAVKAQTYHHYLCIPTEKPIEEWRPSELWHKLDRLAEV 808
>SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)
Length = 1671
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 581 RMLLVPF*YRGHDHHCVLDGEFPKE 507
R L+ PF +R +DH V+D FPK+
Sbjct: 74 RKLIKPFYFRQYDHGSVVDAIFPKD 98
>SB_27173| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1206
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 240 AKDEQTRPPRIVKVGIIQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 377
AKD + P VK H + +P ++P+ E + + + +K+ ++ +V
Sbjct: 823 AKDHRNNPRLAVKAQTYHHYLCIPAEKPIEEWRPSELGHKLDRLAEV 869
>SB_24587| Best HMM Match : ResIII (HMM E-Value=0.82)
Length = 250
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 240 AKDEQTRPPRIVKVGIIQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 377
A D + P VK H + +PT++P+ E + + + +K+ ++ +V
Sbjct: 177 AHDHRNNPRLAVKAQTYHHYLCIPTEKPIEEWRPSELGHKLDRLAEV 223
>SB_47836| Best HMM Match : F5_F8_type_C (HMM E-Value=0.022)
Length = 1002
Score = 28.7 bits (61), Expect = 6.4
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Frame = -1
Query: 434 EGHIPQLLETD--DVNTLLAGNIDDLLDFIENCFLLLVDWTIGGHRDGMLNYSYLHNSRR 261
+GH+ LLE + D L+ ++LLD LL V++ GH G+L +L
Sbjct: 312 KGHLVGLLEVEFLDKEHLVGLLEEELLDKGHLVGLLEVEFLDKGHLVGLLEVEFLDKGHL 371
Query: 260 SGLL---VLGRESVCGDVEVSLL 201
GLL L + + G +EV L
Sbjct: 372 VGLLEEEFLDKGQLVGLLEVEFL 394
>SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 770
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -1
Query: 431 GHIPQLLETDDVNTLLAGNIDDLLDFIENCFLLLVDW 321
G +P + +NTLL GN D F NC LL W
Sbjct: 723 GLVPYWTKLFGINTLLVGNARDSHLFCRNCSGLLPYW 759
>SB_39061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2362
Score = 28.3 bits (60), Expect = 8.4
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 670 ILTNPTTTWKGTPAILYSRPXT 735
I T TTTW+ P +LY P T
Sbjct: 843 IQTQATTTWQAVPILLYHLPIT 864
>SB_18553| Best HMM Match : fn3 (HMM E-Value=0.25)
Length = 1702
Score = 28.3 bits (60), Expect = 8.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 4 WMTVGS*FYASNVRHHSQSWR 66
W+ G FY+SN+ H S WR
Sbjct: 250 WVQSGGMFYSSNISHISAHWR 270
>SB_15536| Best HMM Match : MdcD (HMM E-Value=3.9)
Length = 146
Score = 28.3 bits (60), Expect = 8.4
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = -2
Query: 466 HHGCFSLVQNAKGIFHNSWKQMMLTPSW 383
HH CF ++ +A + Q ++PSW
Sbjct: 44 HHACFGIIPSALSVLVERGDQEAVSPSW 71
>SB_9151| Best HMM Match : WAP (HMM E-Value=0.045)
Length = 1865
Score = 28.3 bits (60), Expect = 8.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 4 WMTVGS*FYASNVRHHSQSWR 66
W+ G FY+SN+ H S WR
Sbjct: 936 WVQSGGMFYSSNISHISAHWR 956
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,593,879
Number of Sequences: 59808
Number of extensions: 515835
Number of successful extensions: 1575
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1571
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2431332827
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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