Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_E21
(852 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49329| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 51 1e-06
SB_27375| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.3e-07) 49 6e-06
SB_31676| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 48 7e-06
SB_31671| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 48 7e-06
SB_54107| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.4e-35) 47 2e-05
SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_37778| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 5e-05
SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 5e-05
SB_59159| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 9e-05
SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41) 45 9e-05
SB_7484| Best HMM Match : Neur_chan_memb (HMM E-Value=1.3e-10) 44 1e-04
SB_38726| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-04
SB_46592| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-04
SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 44 2e-04
SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 43 3e-04
SB_30805| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.9e-06) 42 8e-04
SB_53336| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.022) 42 8e-04
SB_38489| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.1e-24) 41 0.001
SB_41593| Best HMM Match : Neur_chan_memb (HMM E-Value=2.1e-08) 41 0.001
SB_37593| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 41 0.001
SB_32914| Best HMM Match : Neur_chan_memb (HMM E-Value=2.1e-08) 41 0.001
SB_50983| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 40 0.003
SB_4545| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.006
SB_30974| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.9e-07) 37 0.018
SB_41503| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.032
SB_18568| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.5e-22) 36 0.042
SB_55106| Best HMM Match : Neur_chan_memb (HMM E-Value=4.5e-11) 36 0.055
SB_37285| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.073
SB_73| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_42075| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.39
SB_32998| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.39
SB_13360| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 33 0.39
SB_46603| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.39
SB_51192| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.2) 32 0.68
SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 0.82
SB_17868| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.7e-36) 31 0.90
SB_19927| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.9e-07) 31 1.6
SB_35882| Best HMM Match : Neur_chan_memb (HMM E-Value=8.8e-26) 30 2.1
SB_16934| Best HMM Match : Ldl_recept_b (HMM E-Value=1.7e-39) 30 2.7
SB_15521| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.1e-15) 30 2.7
SB_54061| Best HMM Match : Neur_chan_memb (HMM E-Value=2.3e-32) 29 3.6
SB_18327| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.2e-05) 29 3.6
SB_4912| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_50413| Best HMM Match : GRP (HMM E-Value=0.15) 29 3.6
SB_53420| Best HMM Match : Hist_deacetyl (HMM E-Value=0) 29 4.8
SB_20985| Best HMM Match : Neur_chan_memb (HMM E-Value=4.3e-10) 29 4.8
SB_25129| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-24) 29 6.3
SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_49329| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 716
Score = 51.2 bits (117), Expect = 1e-06
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Frame = +2
Query: 290 GCSTWLVSSERLWRPDVVLLNAAATTAGD--YALRAR--VSNNGSVSWIKRLDISTPISM 457
G S + ++LW+PD+ L N A ++A Y +A+ VS+ G W+ ++T +
Sbjct: 133 GISQVNLEPDQLWKPDIYLYNNADSSADGSLYGFKAKIKVSHTGLNMWLAPTILTTSCKI 192
Query: 458 QLDNWPNDMQTCTFKFGSRMHNSDEMD 538
+ +P D Q+CT KFGS +++ +D
Sbjct: 193 NVKYFPFDQQSCTLKFGSWTYDAGSVD 219
>SB_27375| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.3e-07)
Length = 240
Score = 48.8 bits (111), Expect = 6e-06
Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Frame = +2
Query: 317 ERLWRPDVVLLNAAATT---AGDYAL---RARVSNNGSVSWIKRLDISTPISMQLDNWPN 478
+ +W PD+ LLN T AG ++ V N G W + + SM L WP
Sbjct: 149 KEIWVPDISLLNNGDNTVKMAGGRSIFLTNVVVENTGKCVWSGPVTFTFTCSMALSRWPF 208
Query: 479 DMQTCTFKFGSRMHNSDEM 535
D QTC KFGS + S+ M
Sbjct: 209 DQQTCAMKFGSLSYGSNLM 227
>SB_31676| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 422
Score = 48.4 bits (110), Expect = 7e-06
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Frame = +2
Query: 308 VSSERLWRPDVVLLNAAATTAGDYALRARV------SNNGSVSWIKRLDISTPISMQLDN 469
V +W+PD++L N A+T +L ++ S++GS +W+ I T + +
Sbjct: 50 VEPNNVWKPDILLYNPASTDLRVESLYKKIDTKVILSSDGSAAWLSPAIIKTECKVDVRL 109
Query: 470 WPNDMQTCTFKFGSRMHNSDEMD 538
+P D+Q C KFGS H+ ++D
Sbjct: 110 FPFDVQYCDLKFGSWTHDGLKID 132
>SB_31671| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 541
Score = 48.4 bits (110), Expect = 7e-06
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Frame = +2
Query: 308 VSSERLWRPDVVLLNAAATTAGDYALRARVSNN------GSVSWIKRLDISTPISMQLDN 469
++ +R+W+PDV+L N A+T +L ++ N GS +W+ I + + +
Sbjct: 108 IAPDRVWKPDVLLYNRASTDLRFGSLNNKIDTNVIVNHDGSTTWLAPAIIKSECKIDVRF 167
Query: 470 WPNDMQTCTFKFGSRMHNSDEMD 538
+P D+Q+C FGS H+ ++D
Sbjct: 168 FPFDVQSCELTFGSWTHDGLKID 190
>SB_54107| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.4e-35)
Length = 479
Score = 46.8 bits (106), Expect = 2e-05
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 7/102 (6%)
Frame = +2
Query: 308 VSSERLWRPDVVLLNAA-ATTAG---DYALRARVSNNGSVSWIKRLDISTPISMQLDNWP 475
VS ++W PD+VL N A A+T G ++ R VS++G W+ + S+ ++++ +P
Sbjct: 60 VSPLQVWTPDLVLYNNADASTDGSLENFKTRIIVSSDGKNMWLAPVIFSSSCTIKIKYFP 119
Query: 476 NDMQTCTFKFGSRMHNSDEMDF---VIDNRIYSMFXSGAWDV 592
D Q C+ KFGS + +D + +G WD+
Sbjct: 120 FDDQYCSLKFGSWTFDGFHLDLKPEAPQASLSKFIPNGEWDL 161
>SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 705
Score = 46.4 bits (105), Expect = 3e-05
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Frame = +2
Query: 290 GCSTWLVSSERLWRPDVVLLN--AAATTAGDYAL--RARVSNNGSVSWIKRLDISTPISM 457
G ++ V+ +W+PD+VL + T Y RA + +NG W +I + ++
Sbjct: 82 GLTSINVNPNMIWKPDIVLYHNIGFGETGAIYKFDTRATIMHNGYTEWFAPTEIHSICAI 141
Query: 458 QLDNWPNDMQTCTFKFGSRMHNSDEMDFVI--DNRIYSMF-XSGAWDVTAL 601
+ +P D Q C KFGS ++ +++ D+ S + SG WD+ +
Sbjct: 142 DITYFPFDEQFCKMKFGSWSYSGRQLNLTSKGDSADLSKYTKSGEWDLLGM 192
>SB_37778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 45.6 bits (103), Expect = 5e-05
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Frame = +2
Query: 320 RLWRPDVVLLNAA-ATTAGD---YALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQ 487
R+WRPD++L N A T G + + ++ +GS W+ + + + +P D Q
Sbjct: 103 RVWRPDLILYNNADRDTDGALDRFYTKVQLKFDGSSLWLAPIIFKSTCKFDVAYFPFDEQ 162
Query: 488 TCTFKFGSRMHNSDEMDFVIDN----RIYSMFXSGAWDVTALS 604
+C KFGS ++ ++ V +N I +G W++T +S
Sbjct: 163 SCILKFGSWTYDGLRLNIVPENGTDIGIDKFVSNGEWELTGVS 205
>SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 724
Score = 45.6 bits (103), Expect = 5e-05
Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Frame = +2
Query: 278 QGEWGCSTWLVSSER--LWRPDVVLLNAAATTAGDYALR----ARVSNNGSVSWIKRLDI 439
Q ++G +V ER +W PDVVLLN A ++ + V +NG V W+ + +
Sbjct: 52 QSKYGGIKEVVLPERGVIWVPDVVLLNNAEKSSMGKPVNEGNPVLVESNGVVRWLAPVVL 111
Query: 440 STPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDF-VIDNRIYSMF-XSGAWDV 592
+ M + ++P D Q C KF S + E+ +DN + + S WD+
Sbjct: 112 KSRCKMDVRSYPFDEQYCGLKFASWTGSQSELRLDAMDNDVRQNYSESSEWDL 164
>SB_59159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 686
Score = 44.8 bits (101), Expect = 9e-05
Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Frame = +2
Query: 290 GCSTWLVSSERLWRPDVVLLNAA-ATTAGD---YALRARVSNNGSVSWIKRLDISTPISM 457
G + V +W PD+VL N + ++G+ + + + ++G+V W+ + + + +
Sbjct: 233 GMKSIKVDPSCVWVPDIVLYNNVDSDSSGEMYKFTTKVNIHSDGTVQWLSPIQVKSECKI 292
Query: 458 QLDNWPNDMQTCTFKFGSRMHNSDE 532
+ N+P D Q C +FGS ++ E
Sbjct: 293 DITNFPLDEQFCKLEFGSWAYDGFE 317
>SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41)
Length = 342
Score = 44.8 bits (101), Expect = 9e-05
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +2
Query: 290 GCSTWLVSSERLWRPDVVLLNAAATTAG--DYALRARVSNNGSVSWIKRLDISTPISMQL 463
G + S+ +W PD+ +LN+A + +R +++ G V W+ L + T M +
Sbjct: 61 GIKQMTLRSKLIWTPDISVLNSANKDMDLREKNIRLFINSAGEVLWMNPLILHTSCGMDI 120
Query: 464 DNWPNDMQTCTFKFGS 511
++P D Q C +FGS
Sbjct: 121 AHFPFDNQACELRFGS 136
>SB_7484| Best HMM Match : Neur_chan_memb (HMM E-Value=1.3e-10)
Length = 384
Score = 44.4 bits (100), Expect = 1e-04
Identities = 23/93 (24%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Frame = +2
Query: 290 GCSTWLVSSERLWRPDVVLL-NAAATTAG--DYA-LRARVSNNGSVSWIKRLDISTPISM 457
G ++ + +W+PD++L N G D+ R R++++G W + T ++
Sbjct: 16 GVKEVVLQARDVWQPDIILYQNIIQDFDGRLDHTNTRVRITSSGMTYWSMPFVVVTLCTI 75
Query: 458 QLDNWPNDMQTCTFKFGSRMHNSDEMDFVIDNR 556
+ ++P D Q C FGS H+ +E++ + D +
Sbjct: 76 NVSDFPFDTQQCKLTFGSWQHDGNEINLINDRK 108
>SB_38726| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 44.0 bits (99), Expect = 2e-04
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Frame = +2
Query: 317 ERLWRPDVVLLNAAATTAG--DYAL---RARVSNNGSVSWIKRLDISTPISMQLDNWPND 481
+++W+PD L N AG D +L RV NG+V++ R+ + M+ N+P D
Sbjct: 135 DKIWKPDTYLENVKKIDAGSDDKSLVHKGFRVYPNGNVTFSTRISATLSCKMEFRNFPMD 194
Query: 482 MQTCTFKFGSRMHNSDEMDFVI-DNRIY 562
Q+C S DE+ ++ D RIY
Sbjct: 195 RQSCPVTISSYFFPEDEIYYIWGDLRIY 222
>SB_46592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 648
Score = 43.6 bits (98), Expect = 2e-04
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Frame = +2
Query: 311 SSERLWRPDVVLLNAA---ATTAGDYAL---RARVSNNGSVSWIKRLDISTPISMQLDNW 472
S + +W PDV L+N AG L V +G V WI + ++ ++++ W
Sbjct: 424 SPKEIWVPDVSLINNGDKLVHVAGGAELFNADTVVRQSGKVDWIAQASFTSTCNLRVRFW 483
Query: 473 PNDMQTCTFKFGSRMHNSDEMDFVIDN 553
P D Q CT F S + E+ +DN
Sbjct: 484 PMDDQFCTLTFSSWTYTESEIALKMDN 510
>SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 506
Score = 43.6 bits (98), Expect = 2e-04
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Frame = +2
Query: 290 GCSTWLVSSERLWRPDVVLLNAAATTAGD----YALRARVSNNGSVSWIKRLDISTPISM 457
G T + ++ +W PD+VL ++A + Y +S +GS +W + +
Sbjct: 63 GVQTVRLDAKSVWIPDIVLYDSADSVFSGGHEKYKTHVIISKDGSSAWFSPASFRSTCKI 122
Query: 458 QLDNWPNDMQTCTFKFGSRMHNSDEMD 538
+ +P D QTC KFGS + ++D
Sbjct: 123 DVTYFPFDEQTCYMKFGSWTYTIADVD 149
>SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 275
Score = 43.2 bits (97), Expect = 3e-04
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Frame = +2
Query: 323 LWRPDVVLLNAAAT----TAGDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQT 490
LW+PD+ L N A + + + + +V+ +G+ +W+ +T + + +P D Q
Sbjct: 73 LWKPDIYLYNNADSGYDGSLYGFTAKIKVNYSGTNTWLAPKIFTTSCKINVKYFPFDQQE 132
Query: 491 CTFKFGSRMHNSDEMDFVIDN---RIYSMFXSGAWD 589
C KFGS ++++ +D + I +G WD
Sbjct: 133 CRLKFGSWTYDANSVDIFPEEDQASIKGYQKNGEWD 168
>SB_30805| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.9e-06)
Length = 147
Score = 41.5 bits (93), Expect = 8e-04
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 8/102 (7%)
Frame = +2
Query: 311 SSERLWRPDVVLLNAAATT---AGD---YALRARVSNNGSVSWIKRLDISTPISMQLDNW 472
S + +W PDV L+N A + AG + V G V W+ ++ +++ W
Sbjct: 23 SPQEIWVPDVALINNADKSVRLAGGPELFKTDLNVWQGGKVEWVAPASFTSDCKLRVRYW 82
Query: 473 PNDMQTCTFKFGSRMHNSDEMDFVIDNRIYSM--FXSGAWDV 592
P D Q CT F S ++ E+ D+ + + WD+
Sbjct: 83 PIDDQFCTLTFSSWTYDDQEIIIETDDSELTRDHLHNSQWDI 124
>SB_53336| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.022)
Length = 91
Score = 41.5 bits (93), Expect = 8e-04
Identities = 17/65 (26%), Positives = 33/65 (50%)
Frame = +2
Query: 317 ERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCT 496
+++W+PD + N ++T + + G V + +R+ + M L N+P D Q+C+
Sbjct: 26 KQIWKPDTYINNEKSSTVPENQFLLTIDPEGRVVYSQRMTVVASCMMYLRNYPMDTQSCS 85
Query: 497 FKFGS 511
F S
Sbjct: 86 ISFES 90
>SB_38489| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.1e-24)
Length = 445
Score = 41.1 bits (92), Expect = 0.001
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 12/100 (12%)
Frame = +2
Query: 290 GCSTWLVSSERLWRPDVVLLNAA----ATTAGD--------YALRARVSNNGSVSWIKRL 433
G S VS +R W PD++L N+ + D Y + + +NG SW+
Sbjct: 39 GVSQIYVSPKRPWTPDILLYNSVRFVDSAEEDDRLGGGTEKYKTQIEIRSNGYNSWLSPA 98
Query: 434 DISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVIDN 553
+ + +P D Q CT +FGS ++ ++D ID+
Sbjct: 99 MFKSTCDVNTRYFPFDDQHCTLEFGSWAFDASQLDLQIDD 138
>SB_41593| Best HMM Match : Neur_chan_memb (HMM E-Value=2.1e-08)
Length = 319
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = +2
Query: 395 VSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDF--VIDNRIYS- 565
V+N G V W + S+++ WP D+Q C+ FGS + + ++ + D+ Y+
Sbjct: 21 VANTGKVVWQSPATFRSECSIKIRYWPFDVQKCSMTFGSFIFPASALNVTSLYDSSFYTD 80
Query: 566 -MFXSGAWDVTALS 604
SG WD+ +S
Sbjct: 81 RFMQSGDWDIKEVS 94
>SB_37593| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 548
Score = 40.7 bits (91), Expect = 0.001
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Frame = +2
Query: 320 RLWRPDVVLLNAAATT-AGD---YALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQ 487
++W PD++L N A T AG Y S++G+ W ++ ++ + +P D Q
Sbjct: 153 KVWIPDIILYNNADETYAGGLEKYKTSVIASSDGTQEWNSPASFTSTCNINVRYFPFDSQ 212
Query: 488 TCTFKFGSRMH--NSDEMDFVIDNRIYSMF-XSGAWDVTAL 601
C+ KFGS + N M D+ S + +G W + A+
Sbjct: 213 NCSLKFGSWTYVGNRLTMTSTSDSADLSKYVNNGEWHLLAM 253
>SB_32914| Best HMM Match : Neur_chan_memb (HMM E-Value=2.1e-08)
Length = 400
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = +2
Query: 395 VSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDF--VIDNRIYS- 565
V+N G V W + S+++ WP D+Q C+ FGS + + ++ + D+ Y+
Sbjct: 102 VANTGKVVWQSPATFRSECSIKIRYWPFDVQKCSMTFGSFIFPASALNVTSLYDSSFYTD 161
Query: 566 -MFXSGAWDVTALS 604
SG WD+ +S
Sbjct: 162 RFMQSGDWDIKEVS 175
>SB_50983| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 434
Score = 39.9 bits (89), Expect = 0.003
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Frame = +2
Query: 323 LWRPDVVLLNAA--ATTAGDYALRARVS--NNGSVSWIKRLDISTPISMQLDNWPNDMQT 490
LW+PD+VL N Y +V + G + W + T + + +P D QT
Sbjct: 116 LWKPDMVLYNNVNDEDRGEQYLFNTKVIIYSTGDIEWYSPNILKTHCKIDIQYFPFDTQT 175
Query: 491 CTFKFGSRMHNSDEMD 538
C FGS +N ++D
Sbjct: 176 CKLTFGSWTYNGLKID 191
>SB_4545| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 38.7 bits (86), Expect = 0.006
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Frame = +2
Query: 320 RLWRPDVVLLNA--AATTAGDYALRARVS--NNGSVSWIKRLDISTPISMQLDNWPNDMQ 487
++WRPD NA ++ TA D + + ++ NG V + + I+ M+L ++P D Q
Sbjct: 34 KMWRPDPFCYNARESSLTASDDDINSMMTIHPNGDVVYSRMTIITAECEMKLHDFPMDEQ 93
Query: 488 TCTFKFGSRMHNS 526
C K GS +++
Sbjct: 94 QCHLKLGSYSYST 106
>SB_30974| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.9e-07)
Length = 134
Score = 37.1 bits (82), Expect = 0.018
Identities = 15/54 (27%), Positives = 30/54 (55%)
Frame = +2
Query: 377 YALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 538
+ + +VS+ G W+ ++T + + +P D Q+CT KFGS +++ +D
Sbjct: 13 FKAKIKVSHTGLNMWLAPTILTTSCKINVKYFPFDQQSCTLKFGSWTYDAGSVD 66
>SB_41503| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 36.3 bits (80), Expect = 0.032
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = +2
Query: 404 NGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVIDN---RIYSMFX 574
NG W+ + +++ + + +P D Q C+ KFGS ++ + +D V ++ +
Sbjct: 22 NGINIWLAPVLLTSSCKIDVTYFPFDEQHCSLKFGSWTYDGERLDLVSESPSGDVSKYVP 81
Query: 575 SGAWDVTALS 604
SG WD+ + +
Sbjct: 82 SGQWDLVSFT 91
>SB_18568| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.5e-22)
Length = 636
Score = 35.9 bits (79), Expect = 0.042
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Frame = +2
Query: 311 SSERLWRPDVVLLNAAATTA----GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPN 478
++ W+PD NA + D R + +G + + + + I M L ++P
Sbjct: 292 AASNAWKPDPYCYNARQSNMMLEDKDVNSRLSIDPDGKIFYSRGVSIVASCEMDLHDFPL 351
Query: 479 DMQTCTFKFGSRMHNSDEMDFVIDN 553
D Q C KFGS ++ F +N
Sbjct: 352 DTQNCYLKFGSYAFTDTDIFFRWNN 376
>SB_55106| Best HMM Match : Neur_chan_memb (HMM E-Value=4.5e-11)
Length = 269
Score = 35.5 bits (78), Expect = 0.055
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = +2
Query: 386 RARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFV-----ID 550
+A V +NG W +I + + + +P D Q C KFGS + +++F D
Sbjct: 21 KATVKHNGYTEWFAPTEIHSICKIDITFFPFDEQFCKLKFGSWTYTGRQLNFTNKRNSAD 80
Query: 551 NRIYSMFXSGAWDVTA 598
+Y++ SG W + A
Sbjct: 81 LTMYTI--SGEWALVA 94
>SB_37285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 35.1 bits (77), Expect = 0.073
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +2
Query: 350 NAAATTAGDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSD 529
N A T + + ++ N+G W I + ++ + +P D Q C KFGS +N
Sbjct: 5 NVPAGTLYQFKTKVQLFNDGLCVWYAPTIIQSGCNIDITYFPFDDQLCELKFGSWTYNGL 64
Query: 530 EMDFV 544
E++ V
Sbjct: 65 EVNIV 69
>SB_73| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 930
Score = 33.5 bits (73), Expect = 0.22
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = +2
Query: 323 LWRPDVVLLNAAA----TTAGDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQT 490
+W P V++ N A + R V ++G+V W+ I + + + +P D Q
Sbjct: 576 IWTPPVIIYNQAGDLGESITSSNTPRPVVRSDGTVLWMVPTVIKSSCVIDVKYFPFDQQL 635
Query: 491 CTFKFGSRMHNSDEMD 538
C FGS ++ ++D
Sbjct: 636 CKIIFGSWHYDVSKLD 651
>SB_42075| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 32.7 bits (71), Expect = 0.39
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Frame = +2
Query: 323 LWRPDVVLLNAAATT--AGDYALRARVS--NNGSVSWIKRLDISTPISMQLDNWPNDMQT 490
LW PD NA + + D + + ++ +GS+ + + I M L ++P D QT
Sbjct: 17 LWFPDTYCSNAKRSDLMSPDTEIHSSLTLEPDGSIFYSRSAHIVASCEMDLRDFPMDTQT 76
Query: 491 CTFKFGSRMHNSDEM 535
C FGS + +++
Sbjct: 77 CNLVFGSYGYTDNDI 91
>SB_32998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 677
Score = 32.7 bits (71), Expect = 0.39
Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Frame = +2
Query: 326 WRPDVVLLNAAATTAGDYA---LRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCT 496
W PD +N ++ +R ++ +G + + R+ ++ M L +P D Q C
Sbjct: 229 WTPDTYFVNVKSSKFHHVTRENMRTKIWPDGLIYYSSRITLTASCEMDLRFFPMDTQDCV 288
Query: 497 FKFGSRMHNSDEMDFVIDNR 556
K S + +++ + +NR
Sbjct: 289 LKIESYAYTVEDVIYNWNNR 308
>SB_13360| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 480
Score = 32.7 bits (71), Expect = 0.39
Identities = 18/73 (24%), Positives = 30/73 (41%)
Frame = +2
Query: 323 LWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFK 502
+W PD NA + + NG + + R + M L N+P D+Q C+
Sbjct: 151 IWLPDTYFNNANEYEVYIVNQLSLIKPNGDIYYSGRNKVKGACQMDLFNFPLDVQRCSLV 210
Query: 503 FGSRMHNSDEMDF 541
S + ++DF
Sbjct: 211 LESFAYTGRQIDF 223
>SB_46603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 346
Score = 32.7 bits (71), Expect = 0.39
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Frame = +2
Query: 323 LWRPDVVLLNAAATT--AGDYALRARVS--NNGSVSWIKRLDISTPISMQLDNWPNDMQT 490
LW PD NA + + D + + ++ +GS+ + + I M L ++P D QT
Sbjct: 144 LWFPDTYCSNAKRSDLMSPDTEIHSSLTLEPDGSIFYSRSAHIVASCEMDLRDFPMDTQT 203
Query: 491 CTFKFGSRMHNSDEM 535
C FGS + +++
Sbjct: 204 CNLVFGSYGYTDNDI 218
>SB_51192| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.2)
Length = 75
Score = 31.9 bits (69), Expect = 0.68
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +2
Query: 395 VSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 538
+ + G + W + T + + +P D QTC FGS +N ++D
Sbjct: 19 IYSTGDIEWYSPNILKTHCKIDIQYFPFDTQTCKLTFGSWTYNGLKID 66
>SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1758
Score = 27.9 bits (59), Expect(2) = 0.82
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 470 WPNDMQTCTFKFGSRMHNSDEMD 538
+P D Q C KFGS H+S +D
Sbjct: 1509 FPFDEQKCLLKFGSWTHDSSRLD 1531
Score = 22.2 bits (45), Expect(2) = 0.82
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 308 VSSERLWRPDVVLLN 352
V+ E +W PD+V+ N
Sbjct: 1492 VAPEEVWVPDIVIYN 1506
>SB_17868| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.7e-36)
Length = 592
Score = 31.5 bits (68), Expect = 0.90
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 401 NNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 538
+NG+ W + + +++ +P D QTC KFGS H+ +D
Sbjct: 207 SNGTNKWRSPALLKSICKIKVKFFPFDSQTCKLKFGSFSHDITTLD 252
>SB_19927| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.9e-07)
Length = 301
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 392 RVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFK 502
R+ NG++ + RL +++ M L N+P D Q C K
Sbjct: 64 RIFPNGTLLYSMRLKVTSQCPMDLRNFPMDSQKCRLK 100
>SB_35882| Best HMM Match : Neur_chan_memb (HMM E-Value=8.8e-26)
Length = 360
Score = 30.3 bits (65), Expect = 2.1
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +2
Query: 437 ISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVIDNR 556
+ T ++ + ++P D Q C FGS H+ +E++ + D +
Sbjct: 5 VVTLCTINVSDFPFDTQQCKLTFGSWQHDGNEINLINDRK 44
>SB_16934| Best HMM Match : Ldl_recept_b (HMM E-Value=1.7e-39)
Length = 407
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 214 STVRIQADLQMNWIDKRLSWNAGGVGLQHLAGVLGTLVEA*RGTA 348
S + I DL ++W +RL W G+G + G+ GT A GT+
Sbjct: 133 SNLGIPEDLALDWKGRRLFWTDPGLGTISVIGLDGTGRRALIGTS 177
>SB_15521| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.1e-15)
Length = 296
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Frame = +2
Query: 317 ERLWRPDVVLLNAAATTAGDYALR---ARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQ 487
+ +W P NA D + NG V + RL I+ + L +P+D+Q
Sbjct: 32 DEIWIPSTYFFNAKKAYFHDVTTENYLLMIKPNGDVFYSVRLTITMACKLTLQMFPHDVQ 91
Query: 488 TCTFKFGSRMHNSDEMDFVIDNR 556
C S + + ++ + ++R
Sbjct: 92 VCEMMLESYGYQATDVYYRWNSR 114
>SB_54061| Best HMM Match : Neur_chan_memb (HMM E-Value=2.3e-32)
Length = 363
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/50 (24%), Positives = 26/50 (52%)
Frame = +2
Query: 395 VSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFV 544
+ ++G+ SW +I + + + +P D Q+C FGS + + ++ V
Sbjct: 10 IDSDGTNSWYAPTEIKSICQIDITYFPFDAQSCPIIFGSWTYTGNYLNLV 59
>SB_18327| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.2e-05)
Length = 109
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +2
Query: 401 NNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVIDNR---IYSMF 571
N G++ W + + + + +P D Q C+ FGS + S+ + I + +
Sbjct: 12 NTGAIEWYAPTLVKSICKIDITYFPFDKQNCSLVFGSWTYTSEFLSLDIKQKEPDLSKYT 71
Query: 572 XSGAWDV 592
+G W++
Sbjct: 72 PNGQWEM 78
>SB_4912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = -1
Query: 222 HGGLGLTNVSMSQMQGQVDYDFGVGGGV 139
HG LG S+S + G+++ D+GVGGGV
Sbjct: 91 HGHLG----SVSMIMGKMNNDYGVGGGV 114
>SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)
Length = 487
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = -1
Query: 222 HGGLGLTNVSMSQMQGQVDYDFGVGGGV 139
HG LG S+S + G+++ D+GVGGGV
Sbjct: 358 HGHLG----SVSMIMGKMNNDYGVGGGV 381
>SB_53420| Best HMM Match : Hist_deacetyl (HMM E-Value=0)
Length = 360
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 299 TWLVSSERLWRPDVVLLNAAATTAGDYAL-RARVSNNG 409
TWL+ +WRPD+VL +A D L R ++++NG
Sbjct: 272 TWLLD---MWRPDIVLYDAGVDPHVDDVLGRLKLTDNG 306
>SB_20985| Best HMM Match : Neur_chan_memb (HMM E-Value=4.3e-10)
Length = 517
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = +2
Query: 323 LWRPDVVLLNAAATTAGDYAL---RARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTC 493
+W PD V ++A+ + + + V+ G V W R + M L +P D QTC
Sbjct: 38 VWVPDTVFVDASHAYMHNVMVANHKLDVTPGGRVFWGTRATLIARCHMNLRRYPMDEQTC 97
>SB_25129| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-24)
Length = 540
Score = 28.7 bits (61), Expect = 6.3
Identities = 23/65 (35%), Positives = 29/65 (44%)
Frame = +3
Query: 81 RKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPAFETC*HS*VRVHRANTGRSSNELDRQ 260
R+ N H R A + SG P R SQ T HS VR R N G S+ DR+
Sbjct: 425 RQTNPARNHHRSASVSNMSGPPRRGTGASQVGRP-RTSTHSDVRESRDNPGMKSDSRDRE 483
Query: 261 TTELE 275
+ + E
Sbjct: 484 SRDSE 488
>SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1516
Score = 28.3 bits (60), Expect = 8.4
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -1
Query: 207 LTNVSMSQMQGQVDYDFGVGGGVPIVRCEERVDHE 103
L+++S +G VD FGV +R +++D+E
Sbjct: 594 LSHISGGDKEGDVDLHFGVNSQTGAIRLNKKLDYE 628
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,376,885
Number of Sequences: 59808
Number of extensions: 478828
Number of successful extensions: 1382
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 1261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1366
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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