Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_E20
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   283   3e-77
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   279   3e-76
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    45   2e-05
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    29   1.1  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    29   1.1  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    26   7.8  
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos...    26   7.8  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  283 bits (693), Expect = 3e-77
 Identities = 133/210 (63%), Positives = 162/210 (77%)
 Frame = +3

Query: 93  VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 272
           VL   ++D+  +LAA +H+G++N+  +ME YV+KRR+DG H+INL +TWEKLVLAAR + 
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69

Query: 273 AIENPADVFVISSRPFGQRAVLKFASHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLD 452
            IENPADV VISSRP+G RAVLKFA+HTGAT IAGRFTPG FTN I   +REPRL+IV D
Sbjct: 70  TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTD 129

Query: 453 PAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLASEVLRLR 632
           P  D Q I EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W+LLA EVLRLR
Sbjct: 130 PRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLR 189

Query: 633 GVLPRDQRWDVVVDLSFYRXPEXSEKDEQQ 722
           G + R   W+V+ DL FYR PE  E++E+Q
Sbjct: 190 GNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  279 bits (685), Expect = 3e-76
 Identities = 129/213 (60%), Positives = 163/213 (76%)
 Frame = +3

Query: 81  GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAA 260
           G  ++L   +ED+ ++LAA  H+G++N+  +M+ YV+KRR+DG H++NL +TWEKLVLAA
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64

Query: 261 RAVVAIENPADVFVISSRPFGQRAVLKFASHTGATPIAGRFTPGAFTNQIQAAFREPRLL 440
           R +  IENPADV V+S+R +G RAVLKFA+HTGAT IAGRFTPG FTN I   +REPRL+
Sbjct: 65  RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLI 124

Query: 441 IVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLASEV 620
           +V DP  D Q I EAS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W+LLA EV
Sbjct: 125 VVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREV 184

Query: 621 LRLRGVLPRDQRWDVVVDLSFYRXPEXSEKDEQ 719
           LR+RG L R   WDV+ DL FYR PE  E++E+
Sbjct: 185 LRVRGTLSRSAPWDVMPDLYFYRDPEEVEREEE 217


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 46/189 (24%), Positives = 81/189 (42%), Gaps = 27/189 (14%)
 Frame = +3

Query: 126 MLAATTHLGAENV--NFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVF 299
           +L++  HLG      N   + ++Y +R +G H+I+L +T   L  A   V +I     + 
Sbjct: 53  LLSSGAHLGHSTSIWNPYTQPFIYGKR-EGIHIISLDQTMVYLRRAISVVRSIAKENGII 111

Query: 300 VISSRPFGQR-AVLKFASHTGATPIAGRFTPGAFTN--QIQA------------------ 416
           +      GQ+ +V+  A       I  R+ PG  TN  ++Q                   
Sbjct: 112 LFIGTRNGQKDSVVAAAKRARGYHIFDRWLPGLLTNAREVQGKLGGSILCKDNRGKLIQT 171

Query: 417 ----AFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHS 584
               ++  P L+++L+P ++     EA   ++P I + +TD+  R V   IP N  S   
Sbjct: 172 DKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRC 231

Query: 585 IGLMWWLLA 611
             L+  LL+
Sbjct: 232 TDLIAGLLS 240


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 22/69 (31%), Positives = 32/69 (46%)
 Frame = -3

Query: 479 SNGLMVLCRVQYNQETWFTECSLDLVSKSTWCETSRNRRSTGVRGKLQYSTLTEGP**DD 300
           S GL  L R +   E +F +     +S + W  T +   + G+RG   ++   EGP   D
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP-SAD 225

Query: 299 EHISGVLDG 273
            H SGV  G
Sbjct: 226 LH-SGVFGG 233


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
 Frame = +3

Query: 351 HTGATPIAGRFTPGAFTNQIQAAFR--EPRLLIVLDPAQDHQPI---TEASYVNIPVIAL 515
           +  A P  G       T+ I A F+  +P + ++     D   +   T A    +  + L
Sbjct: 29  YVNAAPHLGHLYSLVLTDAI-ARFQNLKPDVSVISSTGTDEHGLKVQTVAQTEGVSPLQL 87

Query: 516 CNTDSPLRFVDIAIPCNTKSSHSI 587
           C+ +S  RF D+A+  NTK +H I
Sbjct: 88  CDRNSK-RFADLAVAANTKFTHFI 110


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = -1

Query: 679 DKSTTTSQRWSRG---STPRSLSTSLANNHHIKPIE 581
           ++S+T +++ SR    ST RS STS AN H  K  E
Sbjct: 106 NRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141


>SPAC664.07c |rad9||checkpoint clamp complex protein
           Rad9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -1

Query: 682 KDKSTTTSQRWSRGSTPRSLSTSLANNHHIKPI 584
           ++ S+    RW   STP SL  S+  N+ +  +
Sbjct: 306 QEVSSMMGNRWQHSSTPASLFNSVERNNSLTAV 338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,422,668
Number of Sequences: 5004
Number of extensions: 74396
Number of successful extensions: 170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)