Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_E20
(853 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 284 7e-77
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 278 5e-75
01_01_1015 + 8029884-8030676,8030755-8030771 29 4.7
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 6.2
09_04_0594 - 18831011-18831360,18831562-18832111,18832364-188334... 29 6.2
05_03_0130 - 8770354-8770678,8770799-8770992,8771091-8771203,877... 29 6.2
04_04_0730 + 27618981-27619143,27619237-27619349,27619695-276198... 29 6.2
02_05_0198 + 26657117-26657282,26657392-26657504,26657645-266578... 29 6.2
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119... 28 8.2
06_01_0665 - 4855870-4855956,4856407-4856482,4856794-4856910,485... 28 8.2
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 28 8.2
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 284 bits (696), Expect = 7e-77
Identities = 131/224 (58%), Positives = 167/224 (74%)
Frame = +3
Query: 63 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWE 242
++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG ++INL +TWE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 243 KLVLAARAVVAIENPADVFVISSRPFGQRAVLKFASHTGATPIAGRFTPGAFTNQIQAAF 422
KL LAAR +VAIENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120
Query: 423 REPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 602
EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K +SIG ++W
Sbjct: 121 SEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFW 180
Query: 603 LLASEVLRLRGVLPRDQRWDVVVDLSFYRXPEXSEKDEQQAXEQ 734
LLA VL++RG + +WDV+VDL FYR PE +++ E++A Q
Sbjct: 181 LLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEAPAQ 224
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 278 bits (681), Expect = 5e-75
Identities = 126/209 (60%), Positives = 159/209 (76%)
Frame = +3
Query: 96 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 275
L+ E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL +TWEKL LAAR +VA
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 276 IENPADVFVISSRPFGQRAVLKFASHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 455
IENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDP 131
Query: 456 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLASEVLRLRG 635
DHQPI E++ NIP IA C+TDSP+R+VDI IP N K SIG ++WLLA VL++RG
Sbjct: 132 RTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRG 191
Query: 636 VLPRDQRWDVVVDLSFYRXPEXSEKDEQQ 722
+ +WDV+VDL FYR PE +++ E++
Sbjct: 192 TILPGHKWDVMVDLFFYRDPEEAKEQEEE 220
>01_01_1015 + 8029884-8030676,8030755-8030771
Length = 269
Score = 29.1 bits (62), Expect = 4.7
Identities = 20/54 (37%), Positives = 23/54 (42%)
Frame = +2
Query: 212 PCDQLASYLGKTCSGCSCCRSHREPR*CVRHLITALRSACCTEVCLAHRCYAYC 373
PC A+Y C G C SH VRH R C + V L HR A+C
Sbjct: 7 PCPSAAAYGPGGCDGVGCSSSHNVWAHRVRHNGGVYR-LCSSCVLLGHR-DAFC 58
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -1
Query: 163 TFSAPRWVVAASILVTSSSLRASTSNP 83
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>09_04_0594 -
18831011-18831360,18831562-18832111,18832364-18833406,
18833496-18833760,18835194-18835340,18835431-18835511,
18835626-18835804,18835935-18836093,18836269-18836398,
18836935-18837094,18837337-18837419,18837865-18837915,
18838035-18838151,18838273-18838359
Length = 1133
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +3
Query: 3 LVL*VHFASQWHYTRLVVTQISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMET 182
+ L V F ++W + + T + G L +ED+ K L+A H E + MET
Sbjct: 236 IYLGVPFIAEWFRNKGHYIKSQVTAATGAIALMQLQEDLKKHLSAECHYTEEELEAYMET 295
Query: 183 Y 185
+
Sbjct: 296 H 296
>05_03_0130 -
8770354-8770678,8770799-8770992,8771091-8771203,
8771320-8771482
Length = 264
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +1
Query: 547 TLLSHATPSLPTLLV*CGGCWQVKC*GFVVCF--PVT 651
++++ +PS+ + CG C+QVKC G C PVT
Sbjct: 71 SMIAAGSPSIYKSGLGCGSCYQVKCSGNSACSGNPVT 107
>04_04_0730 +
27618981-27619143,27619237-27619349,27619695-27619888,
27620141-27620465
Length = 264
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +1
Query: 547 TLLSHATPSLPTLLV*CGGCWQVKC*GFVVCF--PVT 651
++++ +PS+ + CG C+QVKC G C PVT
Sbjct: 71 SMIAAGSPSIYKSGLGCGSCYQVKCTGNSACSGNPVT 107
>02_05_0198 +
26657117-26657282,26657392-26657504,26657645-26657838,
26658133-26658481
Length = 273
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +1
Query: 547 TLLSHATPSLPTLLV*CGGCWQVKC*GFVVCFPVTSAGMLWLICPSTVXL 696
++++ +PS+ CG C+QVKC G C +L +CP L
Sbjct: 72 SMIAAGSPSIYESGKGCGSCYQVKCSGNPSCSGKPVTVVLTDLCPGGACL 121
>08_01_0152 -
1190358-1190462,1190648-1190765,1191134-1192691,
1193338-1193530
Length = 657
Score = 28.3 bits (60), Expect = 8.2
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -2
Query: 345 QTSVQHADRRAVMR*RTHQRGSRWLRQHEQPEQVFPRYDAS*SHGYHQHVVC 190
+ SV + D+ ++ RT RGS L QPE + PRY+ H VC
Sbjct: 269 KNSVNNDDKPMLVSIRTKGRGSSTLPSIAQPEPL-PRYNKHWRRKAHSMCVC 319
>06_01_0665 -
4855870-4855956,4856407-4856482,4856794-4856910,
4857062-4857127,4858578-4858670,4858788-4858909,
4859810-4860365,4860485-4860628,4860698-4860831,
4861003-4861100,4861172-4861353,4861464-4861540,
4862083-4862305,4862580-4862745,4862836-4863040,
4864981-4865199
Length = 854
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +1
Query: 349 RTPVLRLLRDVSHQVLLLTRSKLHSVNHVS*LYWTLHKTINPLLKLHMST 498
R P +LR + + + + L NH+ L+W LHK L ST
Sbjct: 394 RRPRESILRSEFDKAIKIINNDLPGENHLRFLHWDLHKNSQSKLYFRKST 443
>01_06_0902 +
32853708-32853739,32854787-32855596,32856094-32856157,
32856375-32856446
Length = 325
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 170 PDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSH 277
P +C+ T C C K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,799,043
Number of Sequences: 37544
Number of extensions: 551635
Number of successful extensions: 1414
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1414
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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