Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_E20
         (853 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)               347   9e-96
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)                   35   0.096
SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)                  32   0.68 
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)           31   1.6  
SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)                 30   2.1  
SB_38843| Best HMM Match : Dickkopf_N (HMM E-Value=0.28)               29   3.6  
SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)                      29   6.3  
SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3)                28   8.4  
SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)                   28   8.4  
SB_37694| Best HMM Match : PSI_PsaE (HMM E-Value=7.4)                  28   8.4  
SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26)         28   8.4  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score =  347 bits (852), Expect = 9e-96
 Identities = 159/217 (73%), Positives = 184/217 (84%)
 Frame = +3

Query: 75  MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVL 254
           MSGGLD+L L EEDV K LAA  HLGA N +FQME YVYKR++DG ++IN+++TWEKL+L
Sbjct: 1   MSGGLDILQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLL 60

Query: 255 AARAVVAIENPADVFVISSRPFGQRAVLKFASHTGATPIAGRFTPGAFTNQIQAAFREPR 434
           AAR +V IENPADV VIS+RP+GQRA+LK+ASHTGATPIAGRFTPG FTNQIQAAFREPR
Sbjct: 61  AARIIVTIENPADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPR 120

Query: 435 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAS 614
           LLIV DP  DHQP+TEASYVNIPVIA CNTDSPLR VD+AIPCN K  HSIGLM+WLLA 
Sbjct: 121 LLIVCDPRIDHQPVTEASYVNIPVIAFCNTDSPLRHVDVAIPCNNKGIHSIGLMFWLLAR 180

Query: 615 EVLRLRGVLPRDQRWDVVVDLSFYRXPEXSEKDEQQA 725
           EVLR+RG + R   W+++ DL FYR PE +EK+EQ A
Sbjct: 181 EVLRMRGSISRALPWEIMPDLYFYRDPEEAEKEEQAA 217


>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
          Length = 1772

 Score = 34.7 bits (76), Expect = 0.096
 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = -1

Query: 676  KSTTTSQRWSRGSTPRSLSTSLANNHHIKPIEWEDLVLHGIAMST-NLSGE---SVLHKA 509
            K+TT   RWS+G TP       +   H   I    L+ HG   ST NL+ E    VL++ 
Sbjct: 1396 KTTTDKTRWSKGQTPNGKVAQKSKFQH--GIAGTQLIYHGTGPSTKNLTTEQAKQVLNEN 1453

Query: 508  ITGMLTY 488
              G +TY
Sbjct: 1454 ELGTMTY 1460


>SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)
          Length = 315

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 579 HSIGLMWWLLASEVLRLRGVLP 644
           H  G +WW+L SE LR + VLP
Sbjct: 46  HDDGSVWWVLTSESLRAKAVLP 67


>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 31/109 (28%), Positives = 42/109 (38%), Gaps = 5/109 (4%)
 Frame = +2

Query: 248  CSGCSCCRSHREPR*CVRHLITALRSACCTEVC--LAHRCYA---YCGTFHTRCFY*PDP 412
            CS C      R    CV   I  L  + C   C    H   A    C   H+ C      
Sbjct: 822  CSTCEGGNGLRNCSACVAPFI--LLDSYCVRECPQKGHFLNAKLRQCKKCHSSC-----S 874

Query: 413  SCIP*TTSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHCYP 559
            SCI  + + DCI  C+ PS     F C+ +C         T++C +C+P
Sbjct: 875  SCIGPSAN-DCI-TCSDPSNALIGFTCKANCTPGQFKNTATRVCENCHP 921


>SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)
          Length = 432

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +3

Query: 447 LDPAQDHQPITEASYVNIPVIALCNTDSPLRF 542
           LDP  +HQPIT+ +   I ++A   TD+PL+F
Sbjct: 119 LDPDVEHQPITDRAEACICLVA---TDAPLKF 147


>SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 965

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = -3

Query: 521  VAQSNHRNVDI*SFSNGLMVLCRVQYNQETWFTECSLDLVSKSTWCETSRNRRST 357
            V  SN  +V +    N   + CR Q NQ T FT   +  ++    C+T RN RS+
Sbjct: 876  VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMRSS 930


>SB_38843| Best HMM Match : Dickkopf_N (HMM E-Value=0.28)
          Length = 241

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/45 (35%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
 Frame = +2

Query: 263 CCRSHREPR*CVRHLITALRSACCTEVCLAH-RCYAYCGTFHTRC 394
           CC      R C+ H    L   CC  VCLA   C   C   H  C
Sbjct: 16  CCCGSALKRNCLVHSDCGLAKKCCENVCLARLSCDGSCSA-HMDC 59


>SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)
          Length = 487

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -3

Query: 689 TVEGQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVGR-LGVAWDSNVHK 540
           +V  Q+  + P  +T  HT+     T   P HQ + +GR  G   DSNV +
Sbjct: 241 SVTNQMRGHEPRSITYNHTSITAPLTTGYPDHQGSYMGRYAGSVADSNVSR 291


>SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3)
          Length = 225

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -3

Query: 521 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETWFTECSLDLVSKSTWCETSRNRR 363
           V  SN  +V +    N   + CR Q NQ T FT   +  ++    C+T RN R
Sbjct: 155 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 207


>SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)
          Length = 428

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +3

Query: 423 REPR-LLIVLDPAQDHQPITEASYVNIPVIALC-NTDSPLRFVDIAIPCNTK 572
           RE R +++ +D A  H P  + +Y NI +I L  NT S  + +D  I  N K
Sbjct: 255 RENRNIMLFMDNAPCHTPSLKNTYCNIKIIFLSKNTTSKTQPLDSGIIANWK 306


>SB_37694| Best HMM Match : PSI_PsaE (HMM E-Value=7.4)
          Length = 158

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = +1

Query: 274 PSRTPLMCSSSHHGPSVSVLY*SLPRTPVLRLLRDVSHQVLLLTRSKLHSVN 429
           PSRTPL   ++ +G  +S+ Y       VLR+ R   H ++ ++R  L ++N
Sbjct: 49  PSRTPLSQHNNGYGLRISI-YAVRYTAMVLRINRFALHIIVTVSRITLSAIN 99


>SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26)
          Length = 280

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -3

Query: 521 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETWFTECSLDLVSKSTWCETSRNRR 363
           V  SN  +V +    N   + CR Q NQ T FT   +  ++    C+T RN R
Sbjct: 196 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 248


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,006,212
Number of Sequences: 59808
Number of extensions: 626190
Number of successful extensions: 1467
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1459
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)