Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_E20
         (853 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...   280   1e-75
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...   271   4e-73
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...   254   7e-68
At2g22340.1 68415.m02651 hypothetical protein                          33   0.32 
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP...    32   0.42 
At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   2.2  
At4g01760.1 68417.m00229 DC1 domain-containing protein similar t...    29   5.2  
At2g03340.1 68415.m00293 WRKY family transcription factor contai...    29   5.2  
At1g11980.1 68414.m01384 ubiquitin family protein similar to Cha...    28   6.9  
At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin fa...    28   9.1  
At4g26490.1 68417.m03812 expressed protein                             28   9.1  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score =  280 bits (686), Expect = 1e-75
 Identities = 129/214 (60%), Positives = 160/214 (74%), Gaps = 1/214 (0%)
 Frame = +3

Query: 96  LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 275
           L+  E DV  M AA  HLG +N N+QME YV+KRR DG ++ NL +TWEKL +AAR +VA
Sbjct: 12  LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71

Query: 276 IENPADVFVISSRPFGQRAVLKFASHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 455
           IENP D+ V S+RP+GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72  IENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDP 131

Query: 456 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLASEVLRLRG 635
             DHQPI E +  NIP+IA C+TDSP+RFVDI IP N K  HSIG ++WLLA  VL++RG
Sbjct: 132 RTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 191

Query: 636 VLPRDQRWDVVVDLSFYRXPEXSE-KDEQQAXEQ 734
            +   Q+WDV+VDL FYR PE ++ +DE +A  Q
Sbjct: 192 TIAAGQKWDVMVDLFFYREPEETKPEDEDEAGPQ 225


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score =  271 bits (664), Expect = 4e-73
 Identities = 122/208 (58%), Positives = 155/208 (74%)
 Frame = +3

Query: 108 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 287
           E D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76

Query: 288 ADVFVISSRPFGQRAVLKFASHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDH 467
            D+ V S+RP+GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  DH
Sbjct: 77  KDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDH 136

Query: 468 QPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLASEVLRLRGVLPR 647
           QPI E +  NIP IA C+TDSP+ FVDI IP N K  HSIG ++WLLA  VL++RG +  
Sbjct: 137 QPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILA 196

Query: 648 DQRWDVVVDLSFYRXPEXSEKDEQQAXE 731
            Q+WDV+VDL FYR PE ++++  +  E
Sbjct: 197 AQKWDVMVDLFFYREPEEAKQEGDEEAE 224


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score =  254 bits (621), Expect = 7e-68
 Identities = 114/189 (60%), Positives = 143/189 (75%)
 Frame = +3

Query: 108 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 287
           E D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76

Query: 288 ADVFVISSRPFGQRAVLKFASHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDH 467
            D+ V S+RP+GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  DH
Sbjct: 77  KDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDH 136

Query: 468 QPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLASEVLRLRGVLPR 647
           QPI E +  NIP IA C+TDSP+ FVDI IP N K  HSIG ++WLLA  VL++RG +  
Sbjct: 137 QPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILA 196

Query: 648 DQRWDVVVD 674
            Q+WDV+V+
Sbjct: 197 AQKWDVMVN 205


>At2g22340.1 68415.m02651 hypothetical protein
          Length = 358

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 146 SWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC 265
           SW     LP+GD  +Q  C WY   +  S +G+  +   C
Sbjct: 188 SWTEASLLPEGDCFIQLNCLWYKPKEDTSVMGRKMASSDC 227


>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
           identical to SP|Q9GCB9 Mitochondrial ribosomal protein
           S2 {Arabidopsis thaliana}; contains Pfam profile
           PF00318: ribosomal protein S2
          Length = 219

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 429 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD-IAIPCNTKSS 578
           P  ++V D  +    I EAS + IPV+A+ + + PL F + I  P   + S
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPARDS 181


>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 384 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 485
           TP   TNQ++ A  E     +LDP     PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653


>At4g01760.1 68417.m00229 DC1 domain-containing protein similar to
           T15B16.10 similar to A. thaliana CHP-rich proteins
           encoded by T10M13, GenBank accession number AF001308
          Length = 667

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -3

Query: 461 LCRVQYNQETWFTECSLDLVSKSTWC 384
           +C  + N  TWF  C     S  TWC
Sbjct: 569 ICEKETNPNTWFYTCKDHRASLHTWC 594


>At2g03340.1 68415.m00293 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 513

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -3

Query: 689 TVEGQINHNIPALVTGKHTTKP--QHFTCQQPPHQTNRVGRL 570
           T EG+ NH++PA  T  H  +P  QH T     +    V RL
Sbjct: 464 TYEGKHNHDVPAARTSSHQLRPNNQHNTSTVNFNHQQPVARL 505


>At1g11980.1 68414.m01384 ubiquitin family protein similar to Chain
           A, Structure Of Ubiquitin-Like Protein, Rub1 GI:6729726
           from [Arabidopsis thaliana]
          Length = 78

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +2

Query: 212 PCDQLASYLGKTCSGCSCCRSHREPR*CVRHLITALRSACC 334
           P  Q   Y GK  +     + +   R  V HL+ ALR  CC
Sbjct: 38  PVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGGCC 78


>At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin
           family protein contains Pfam domain, PF01190: Pollen
           proteins Ole e I family
          Length = 146

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +3

Query: 525 DSPLRFVDIAIPCNTKSSHSIGLMWWLLASEVLRLRGVLPRDQRWD 662
           D  L   ++A+ C TKS   +    +  +  V  +   +P  +RWD
Sbjct: 49  DHVLEGAEVAVLCITKSGEVVNYQAFTNSKGVYTVAETMPESERWD 94


>At4g26490.1 68417.m03812 expressed protein 
          Length = 200

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -1

Query: 433 RGSRNAAWIWLVKAPGVKRPAIGVAPVCEANFST 332
           R SR + WIW V      RP I V  +  AN  T
Sbjct: 29  RSSRTSLWIWCVAVFLAIRPRIPVFDIPNANLHT 62


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,559,669
Number of Sequences: 28952
Number of extensions: 420972
Number of successful extensions: 1019
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)