Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_E19
         (851 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-...    31   0.97 
At1g12360.1 68414.m01428 cytokinesis-related Sec1 protein (KEULE...    30   2.2  
At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family prot...    29   3.9  
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    29   5.2  
At1g77240.1 68414.m08996 AMP-binding protein, putative strong si...    29   5.2  
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi...    28   9.1  
At3g62370.1 68416.m07006 expressed protein                             28   9.1  
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ...    28   9.1  
At1g64340.1 68414.m07291 hypothetical protein                          28   9.1  

>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
           GTP-binding protein GUF1 - Saccharomyces cerevisiae,
           PIR:S50374
          Length = 661

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -1

Query: 323 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCYTSHV 177
           LG +H  PA +I+R P PP  +S   +++++F     E    +CY S V
Sbjct: 231 LGLEHVLPA-VIERIPPPPG-ISESPLRMLLFDSFFNEYKGVICYVSVV 277


>At1g12360.1 68414.m01428 cytokinesis-related Sec1 protein (KEULE)
           similar to cytokinesis-related Sec1 protein KEULE
           [Arabidopsis thaliana] gi|12659318|gb|AAK01291; contains
           Pfam domain, PF00995: Sec1 family
          Length = 666

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -2

Query: 715 TLGGILLXNDRKSRHRRIKKQRRYERXAATSQLSPVV-TFLAPLAKNSLX*RIDRPCFRS 539
           T GG  L  D   + R ++K+R+ E     S+  P++   +  L+K  L  + D PC   
Sbjct: 484 TPGGFTLKFDLHKKKRAVRKERQEEAAWQLSRFYPMIEELIEKLSKGELP-KEDFPCMND 542

Query: 538 P 536
           P
Sbjct: 543 P 543


>At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family protein
           similar to SP|P22418 Fructose-1,6-bisphosphatase,
           chloroplast precursor (EC 3.1.3.11)
           (D-fructose-1,6-bisphosphate 1-phosphohydrolase)
           (FBPase) {Spinacia oleracea}; contains Pfam profile
           PF00316: fructose-1,6-bisphosphatase
          Length = 404

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -2

Query: 193 ATPLMSPYNARLESSSTGSSFPADSPEPVPLAVVSLD 83
           A+ + SP+N+ L   S  SS  +D   P PL +VS D
Sbjct: 105 ASLVASPFNSSLGKLSVNSSSGSDRDAPKPLDIVSND 141


>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 463 LSEDRNLAWSKRAKAGLIQMFSTHRDCESTAYRSFXIK 576
           LS  R   W  RAK  L+Q+  TH+  E T+Y+S  ++
Sbjct: 282 LSSRRIDRW--RAKYQLMQLVRTHKGMEDTSYKSIELR 317


>At1g77240.1 68414.m08996 AMP-binding protein, putative strong
           similarity to AMP-binding protein GI:1903034 from
           [Brassica napus]; contains Pfam AMP-binding domain
           PF00501
          Length = 545

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -3

Query: 426 VPPQSNSPPGSVLE-PDHAGVLNGDE-RFRHVTTLHAWNET 310
           +P  SNS P +VL   + A  + GD     H TT+H W+ET
Sbjct: 5   LPHASNSCPLTVLGFLERAASVFGDSPSLLHTTTVHTWSET 45


>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
           like protein A, Arabidopsis thaliana, gb:Q07970
          Length = 790

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 287 DRAPLPPNRVSNETMKVVVFQRRSRET 207
           +RAPLP   V  E +  + F +R +ET
Sbjct: 7   NRAPLPSPNVKKEALSSIPFDKRRKET 33


>At3g62370.1 68416.m07006 expressed protein
          Length = 361

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -3

Query: 411 NSPPGSVL--EPDHAGVLNGDERFRHVTTLHAWN 316
           N+ PG +    P   G  NG +RF H+  ++AWN
Sbjct: 160 NAIPGRLYGGNPIDNGEGNGGDRFGHLVDIYAWN 193


>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
           F-box family protein
          Length = 379

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -1

Query: 338 SPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETIS 201
           S LC LG+  R PAD I+   L   R+    M  +V  R S + I+
Sbjct: 54  SILCKLGSTSRCPADFIN-VLLTCKRLKGLAMNPIVLSRLSPKAIA 98


>At1g64340.1 68414.m07291 hypothetical protein
          Length = 265

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 538 DCESTAYRSFXIKSF*QEVPEKLPQGITGLWQPSVHS 648
           DCEST Y SF + SF +++   +      +  P + S
Sbjct: 124 DCESTLYDSFELNSFNRQLNSAISSSARSMSMPHLSS 160


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,707,363
Number of Sequences: 28952
Number of extensions: 374976
Number of successful extensions: 1046
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)