Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_E17
         (1019 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    36   0.009
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.46 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.80 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 35.9 bits (79), Expect = 0.009
 Identities = 16/35 (45%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = +3

Query: 411 KKPPPPPPXXXXXXKKIXKXX-PPPPPXXXGPPPP 512
           K PPPPPP              PPP P   GPPPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPP 764



 Score = 27.9 bits (59), Expect = 2.4
 Identities = 14/35 (40%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
 Frame = +3

Query: 420 PPPPPXXXXXXKKIXKXXPPPPP----XXXGPPPP 512
           P P P        I    PPPPP       GPPPP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.3 bits (65), Expect = 0.46
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = +3

Query: 417  PPPPPPXXXXXXKKIXKXXPPPPPXXXGPPPP 512
            PP PPP       K     PP PP    PP P
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.80
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = +3

Query: 417 PPPPPPXXXXXXKKIXKXXPPPPPXXXGPPPP 512
           PPPPPP        I    P PP     PPPP
Sbjct: 337 PPPPPPPRSNAAGSI----PLPPQGRSAPPPP 364



 Score = 26.2 bits (55), Expect = 7.4
 Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
 Frame = +3

Query: 414 KPPPPPPXXXXXXKKIX--KXXPPPPP 488
           KPP PPP        +   K  PPPPP
Sbjct: 289 KPPLPPPSSRVSAAALAANKKRPPPPP 315


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +3

Query: 417 PPPPPPXXXXXXKKIXKXXPPPPP 488
           PPPPPP          +  PPPPP
Sbjct: 9   PPPPPPPPGFEPPS--QPPPPPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,809,996
Number of Sequences: 5004
Number of extensions: 22907
Number of successful extensions: 136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 531251476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)