Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_E16
         (848 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)               321   4e-88
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)                   36   0.042
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.17 
SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)                 31   1.2  
SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)           31   1.6  
SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)                  30   2.7  
SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)                      29   3.6  
SB_4520| Best HMM Match : Tsg (HMM E-Value=7.8)                        29   3.6  
SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032)                 29   4.8  
SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3)                29   4.8  
SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26)         29   4.8  
SB_1560| Best HMM Match : Glyco_hydro_67C (HMM E-Value=8.4)            29   6.3  
SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  
SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)                   28   8.3  
SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28)                     28   8.3  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score =  321 bits (789), Expect = 4e-88
 Identities = 147/195 (75%), Positives = 168/195 (86%)
 Frame = +2

Query: 65  MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVL 244
           MSGGLD+L L EEDV K LAA  HLGA N +FQME YVYKR++DG ++IN+++TWEKL+L
Sbjct: 1   MSGGLDILQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLL 60

Query: 245 AARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPR 424
           AAR +V IENPADV VIS+RP+GQRA+LK+A+HTGATPIAGRFTPG FTNQIQAAFREPR
Sbjct: 61  AARIIVTIENPADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPR 120

Query: 425 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 604
           LLIV DP  DHQP+TEASYVNIPVIA CNTDSPLR VD+AIPCN K  HSIGLM+WLLAR
Sbjct: 121 LLIVCDPRIDHQPVTEASYVNIPVIAFCNTDSPLRHVDVAIPCNNKGIHSIGLMFWLLAR 180

Query: 605 EVLRLRGVLPRDQRW 649
           EVLR+RG + R   W
Sbjct: 181 EVLRMRGSISRALPW 195



 Score = 29.9 bits (64), Expect = 2.7
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +3

Query: 669 FFYRDPEXSEKDEQQA 716
           +FYRDPE +EK+EQ A
Sbjct: 202 YFYRDPEEAEKEEQAA 217


>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
          Length = 1772

 Score = 35.9 bits (79), Expect = 0.042
 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = -3

Query: 666  KSTTTSQRWSRGSTPRSLNTSRANNHHIKPIEWEDLVLHGIAMST-NLSGE---SVLHKA 499
            K+TT   RWS+G TP      ++   H   I    L+ HG   ST NL+ E    VL++ 
Sbjct: 1396 KTTTDKTRWSKGQTPNGKVAQKSKFQH--GIAGTQLIYHGTGPSTKNLTTEQAKQVLNEN 1453

Query: 498  ITGMLTY 478
              G +TY
Sbjct: 1454 ELGTMTY 1460


>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 32/109 (29%), Positives = 43/109 (39%), Gaps = 5/109 (4%)
 Frame = +1

Query: 238  CSGCSCCRSHREPR*CVRHLIAALRSACCTEVC--RAHRCYA---YCGTFHTRCFY*PDP 402
            CS C      R    CV   I  L  + C   C  + H   A    C   H+ C      
Sbjct: 822  CSTCEGGNGLRNCSACVAPFI--LLDSYCVRECPQKGHFLNAKLRQCKKCHSSC-----S 874

Query: 403  SCIP*TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHCYP 549
            SCI   S+ DCI  C+ PS     F C+ +C         T++C +C+P
Sbjct: 875  SCIG-PSANDCI-TCSDPSNALIGFTCKANCTPGQFKNTATRVCENCHP 921


>SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 965

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = -2

Query: 511  VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRRST 347
            V  SN  +V +    N   + CR Q NQ T FT   +  ++    C+T RN RS+
Sbjct: 876  VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMRSS 930


>SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)
          Length = 432

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +2

Query: 437 LDPAQDHQPITEASYVNIPVIALCNTDSPLRF 532
           LDP  +HQPIT+ +   I ++A   TD+PL+F
Sbjct: 119 LDPDVEHQPITDRAEACICLVA---TDAPLKF 147


>SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)
          Length = 315

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 569 HSIGLMWWLLAREVLRLRGVLP 634
           H  G +WW+L  E LR + VLP
Sbjct: 46  HDDGSVWWVLTSESLRAKAVLP 67


>SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)
          Length = 487

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -2

Query: 670 NQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVGR-LGVAWDSNVHK 530
           NQ+  + P  +T  HT+     T   P HQ + +GR  G   DSNV +
Sbjct: 244 NQMRGHEPRSITYNHTSITAPLTTGYPDHQGSYMGRYAGSVADSNVSR 291


>SB_4520| Best HMM Match : Tsg (HMM E-Value=7.8)
          Length = 594

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = -3

Query: 687 QGHGRRTKSTTTSQRWSRGSTPRSLNTSRA---NNHHIKPIEWE-DLVLHGIAMSTNLSG 520
           QGH +RT       RWS  +TPR   TS     N  H+ P+  + D+  H  A + +L  
Sbjct: 54  QGHRQRTF------RWSHATTPRGGGTSSVLALNLAHVPPVSGDYDVAFHKHAAAVHLED 107

Query: 519 ESVLH 505
            S ++
Sbjct: 108 WSTIN 112


>SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032)
          Length = 397

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 418 TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHC 543
           TSSLD + PC+  S H+   +  + C C+  +++    C  C
Sbjct: 331 TSSLDTLAPCSF-SCHFACDVNTNQCICYYGYQMSDNKCKAC 371


>SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3)
          Length = 225

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -2

Query: 511 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRR 353
           V  SN  +V +    N   + CR Q NQ T FT   +  ++    C+T RN R
Sbjct: 155 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 207


>SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26)
          Length = 280

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -2

Query: 511 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRR 353
           V  SN  +V +    N   + CR Q NQ T FT   +  ++    C+T RN R
Sbjct: 196 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 248


>SB_1560| Best HMM Match : Glyco_hydro_67C (HMM E-Value=8.4)
          Length = 296

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 23/99 (23%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
 Frame = -3

Query: 699 FHFXQGHGRRTKSTTTSQRWSRGSTPRSLNTSRANNHHIKPIEWEDLV---LHGIAMSTN 529
           +H+ Q  G + +ST    R+   STP   +    ++ +I+P +W D+     +  ++   
Sbjct: 159 YHY-QHRGSKRRSTV-KYRFGDASTPLYQDLKDKSSRNIRPWQWHDMTSRYQYAQSLINQ 216

Query: 528 LSGESVLHKAITG----MLTYEASVMG*WSCAGSNTIKR 424
           L+ E +    +TG    ++ ++ASV+  W     N  +R
Sbjct: 217 LADERLYEFTLTGQFEDVVGHDASVL--WKTVSLNGKRR 253


>SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1601

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 627 TPRSLNTSRANNHHIKPIEWEDLVLHGIAMSTNLSGESVLH 505
           T +SLN S  N   + P EW + V+ G+     LSG ++L+
Sbjct: 864 TAQSLNVSVDNLKFLAPTEWRE-VIPGLKQEILLSGSNMLN 903


>SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)
          Length = 428

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +2

Query: 413 REPR-LLIVLDPAQDHQPITEASYVNIPVIALC-NTDSPLRFVDIAIPCNTK 562
           RE R +++ +D A  H P  + +Y NI +I L  NT S  + +D  I  N K
Sbjct: 255 RENRNIMLFMDNAPCHTPSLKNTYCNIKIIFLSKNTTSKTQPLDSGIIANWK 306


>SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28)
          Length = 859

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -3

Query: 684 GH-GRRTKSTTTSQRWSRGSTPRSLNTS 604
           GH GRR+ + + S  WS  STPR+  TS
Sbjct: 435 GHYGRRSSAGSNSAPWSDASTPRNPATS 462


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,795,945
Number of Sequences: 59808
Number of extensions: 642559
Number of successful extensions: 1573
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1564
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)