Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_E15
(854 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 63 3e-12
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 61 9e-12
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 60 2e-11
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 59 5e-11
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 59 5e-11
AF025669-1|AAB81523.1| 243|Tribolium castaneum GABA receptor su... 47 2e-07
AM292361-1|CAL23173.2| 373|Tribolium castaneum gustatory recept... 26 0.33
U63132-1|AAB38392.1| 372|Tribolium castaneum decapentaplegic pr... 22 7.1
AM292374-1|CAL23186.2| 659|Tribolium castaneum gustatory recept... 22 7.1
AJ606487-1|CAE55183.1| 203|Tribolium castaneum Giant protein pr... 21 9.4
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 62.9 bits (146), Expect = 3e-12
Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 2/139 (1%)
Frame = +2
Query: 140 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSS 316
ES P ++ LTL + ++ E + A L + W D L WN E+G L ++
Sbjct: 25 ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82
Query: 317 ERLWRPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTC 493
+LW+PDV++ N+A G + V +NGS ++ + M + +P D Q C
Sbjct: 83 NKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGSCLYVPPGIFKSTCKMDITWFPFDDQHC 142
Query: 494 TFKFGSRMHNSDEMDFVID 550
KFGS ++ +++D V++
Sbjct: 143 DMKFGSWTYDGNQLDLVLN 161
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 61.3 bits (142), Expect = 9e-12
Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 2/139 (1%)
Frame = +2
Query: 140 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSS 316
ES P ++ LTL + ++ E + A L + W D L WN E+G L ++
Sbjct: 25 ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82
Query: 317 ERLWRPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTC 493
+LW+PDV++ N+A G + V +NGS ++ + + + +P D Q C
Sbjct: 83 NKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGSCLYVPPGIFKSTCKIDITWFPFDDQHC 142
Query: 494 TFKFGSRMHNSDEMDFVID 550
KFGS ++ +++D V++
Sbjct: 143 DMKFGSWTYDGNQLDLVLN 161
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 60.5 bits (140), Expect = 2e-11
Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 2/139 (1%)
Frame = +2
Query: 140 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSS 316
ES P ++ LTL + ++ E + A L + W D L WN E+G L ++
Sbjct: 25 ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82
Query: 317 ERLWRPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTC 493
+LW+PDV++ N+A G + V + GS ++ + M + +P D Q C
Sbjct: 83 NKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGSCLYVPPGIFKSTCKMDITWFPFDDQHC 142
Query: 494 TFKFGSRMHNSDEMDFVID 550
KFGS ++ +++D V++
Sbjct: 143 DMKFGSWTYDGNQLDLVLN 161
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 58.8 bits (136), Expect = 5e-11
Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Frame = +2
Query: 239 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTA-GDYALRARVSNNGS 412
L + W D L WN E+G L ++ +LW+PDV++ N+A G + V + GS
Sbjct: 56 LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115
Query: 413 VSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVID 550
++ + M + +P D Q C KFGS ++ +++D V++
Sbjct: 116 CLYVPPGIFKSTCKMDITWFPFDDQHCDMKFGSWTYDGNQLDLVLN 161
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 58.8 bits (136), Expect = 5e-11
Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Frame = +2
Query: 239 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTA-GDYALRARVSNNGS 412
L + W D L WN E+G L ++ +LW+PDV++ N+A G + V + GS
Sbjct: 56 LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115
Query: 413 VSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVID 550
++ + M + +P D Q C KFGS ++ +++D V++
Sbjct: 116 CLYVPPGIFKSTCKMDITWFPFDDQHCDMKFGSWTYDGNQLDLVLN 161
>AF025669-1|AAB81523.1| 243|Tribolium castaneum GABA receptor
subunit protein.
Length = 243
Score = 46.8 bits (106), Expect = 2e-07
Identities = 50/187 (26%), Positives = 84/187 (44%), Gaps = 23/187 (12%)
Frame = +2
Query: 20 RLILFWLPF-LLTCAIASAAECENAT---------SLSLMIDSLLATYDRESPPD---SK 160
RL+ WL F L + A +A + AT ++S ++DS +YD+ P+
Sbjct: 5 RLVTLWLAFNLASIAQDPSASVDAATGGGSVLGDVNISAILDSFSVSYDKRVRPNYGGPP 64
Query: 161 IVVNLTLH-LRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWLVSSE---RLW 328
+ V +T++ L +++ E + + + W D RL++ G T V SE +W
Sbjct: 65 VEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYGKRP-GVETLSVGSEFIKNIW 123
Query: 329 RPDVVLLNAA------ATTAGDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQT 490
PD +N ATT+ ++ RV ++GS++ RL I+ M L P D Q
Sbjct: 124 VPDTFFVNEKQSYFHIATTSNEFI---RVHHSGSITRSIRLTITASCPMNLQYLPMDRQL 180
Query: 491 CTFKFGS 511
C + S
Sbjct: 181 CHIEIES 187
>AM292361-1|CAL23173.2| 373|Tribolium castaneum gustatory receptor
candidate 40 protein.
Length = 373
Score = 26.2 bits (55), Expect = 0.33
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 380 ALRARVSNNGSVSWIKRLDISTPISMQLDNWPND 481
A+ + N + SW + ++ + + M LDNW ND
Sbjct: 272 AIEGIIFFNLAKSWPQLIEKWSRVEMALDNWKND 305
>U63132-1|AAB38392.1| 372|Tribolium castaneum decapentaplegic
protein protein.
Length = 372
Score = 21.8 bits (44), Expect = 7.1
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -2
Query: 427 LYPG-DGAVIRYTGAESVVPGGGC 359
LY G DG+VI E VV G GC
Sbjct: 348 LYLGSDGSVILKNYKEMVVVGCGC 371
>AM292374-1|CAL23186.2| 659|Tribolium castaneum gustatory receptor
candidate 53 protein.
Length = 659
Score = 21.8 bits (44), Expect = 7.1
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Frame = +2
Query: 23 LILFWLPFLLTCAIASAAECENATSLSLMIDSLLATYDRES--PPDSKIVVNL 175
L+ FW F + + +C N S + + T DR P + +N+
Sbjct: 271 LLTFWSAFFIVNVLYICNQCYNTVEESRIFGLVTFTPDRSKFRPSSLRFCLNI 323
>AJ606487-1|CAE55183.1| 203|Tribolium castaneum Giant protein
protein.
Length = 203
Score = 21.4 bits (43), Expect = 9.4
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Frame = -3
Query: 219 VDSDSRMLACLKCRVRLTTILESGGDSRSYVARSESIMRDSDVAFSHSAALAIAQVR--R 46
V S+S CR I + ++ V+ + +DS AF+ +AQV
Sbjct: 56 VSSNSYTPKIKSCRPFKAYIKDPLTLAQGLVSTEMLLKKDSSEAFNEFRTKILAQVHGTN 115
Query: 45 NGNQNNISR 19
NG N+ R
Sbjct: 116 NGTNKNMRR 124
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,852
Number of Sequences: 336
Number of extensions: 4063
Number of successful extensions: 23
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23659332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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