Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_E14
         (857 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    26   0.44 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    26   0.44 
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    24   1.3  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    24   1.3  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    24   1.3  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   2.3  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   2.3  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   2.3  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    22   5.4  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   7.1  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 625 WKWMLSLGWLVYGIGDLMI 569
           +KW+  L W  YG G LMI
Sbjct: 585 FKWLSFLSWFRYGNGALMI 603


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 625 WKWMLSLGWLVYGIGDLMI 569
           +KW+  L W  YG G LMI
Sbjct: 585 FKWLSFLSWFRYGNGALMI 603


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 46  SAASAIPSLVNAFSSSKPPQTDNPSAR 126
           +AA  +P + N  S   PP T+N  A+
Sbjct: 209 TAAFMLPIIHNLLSDKNPPNTENNCAQ 235


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 299 SIWFRCQ*DRSTGVEKG*SNVEETVPG 219
           ++W  CQ   + GVE+G       +PG
Sbjct: 147 TVWSHCQCVLADGVERGILTANRMIPG 173


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 299 SIWFRCQ*DRSTGVEKG*SNVEETVPG 219
           ++W  CQ   + GVE+G       +PG
Sbjct: 147 TVWSHCQCVLADGVERGILTANRMIPG 173


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 324 RTSPPS*KATATRILSILRLSFFLPPLASK 413
           R+SP +  A A+  ++I  +S  +PP AS+
Sbjct: 250 RSSPTTATAIASATVTIQNVSNTIPPFASR 279


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 324 RTSPPS*KATATRILSILRLSFFLPPLASK 413
           R+SP +  A A+  ++I  +S  +PP AS+
Sbjct: 198 RSSPTTATAIASATVTIQNVSNTIPPFASR 227


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 324 RTSPPS*KATATRILSILRLSFFLPPLASK 413
           R+SP +  A A+  ++I  +S  +PP AS+
Sbjct: 381 RSSPTTATAIASATVTIQNVSNTIPPFASR 410


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 254 FQRLYFDLTGTETKSNS-VTVQSLPNVSSIIKGYRDAYLVNLEAVV 388
           F  L  +L G     N  VT+  LPNV+S +     A   NLE VV
Sbjct: 197 FVSLVRELRGAFKAENLLVTLTVLPNVNSTVYYDPRALSPNLEFVV 242


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 13/49 (26%), Positives = 16/49 (32%)
 Frame = +2

Query: 554 WLHQPDHQIPDSIHQPPQT*HPFPSIP*TPYXKEFAPGLKPPLVIRGSI 700
           WL  P   +P     P    HP+  I    Y    + G   P    G I
Sbjct: 106 WLSSPSGNVPPLTPSPGPPSHPYTVIS-NGYSSPMSSGSYDPYSPNGKI 153


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,545
Number of Sequences: 336
Number of extensions: 3858
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23763101
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)