Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_E14
         (857 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)                    31   1.2  
SB_34911| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_34943| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.8  
SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3)               29   3.7  
SB_30122| Best HMM Match : YadA (HMM E-Value=2)                        29   4.8  
SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)                 29   4.8  
SB_35094| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.4  
SB_5404| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.4  
SB_33345| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_27417| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)               28   8.5  
SB_23207| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)               28   8.5  

>SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)
          Length = 458

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +1

Query: 415 TSHS*PLLDYC*RHS*RSQCAGHPFILSHYYWRSRPY--ASSHPPLAI 552
           T +   LL YC     R   AGHPF+L  Y +  R Y   +S  PL I
Sbjct: 91  TKYDIDLLGYCTEQEIRRVVAGHPFLLDGYKFDLRVYVLVTSCDPLRI 138


>SB_34911| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 904

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
 Frame = +1

Query: 475 AGHPFILSHYYWRSRPYASSHPPLAILATSTRSSNPRFHTPTTPDLTSISI-NPLNAVLX 651
           AGHP  + H   R   YAS H     L      + P  H PT   L  +++ N L     
Sbjct: 653 AGHPSGIYHPALRGVGYASMHQLQQNLMQYRLLAPPGTHNPTQSPLAGLALQNKLYMHDT 712

Query: 652 G-VRAGVKASVGHQRLHQR-ISPPR 720
           G + A   +S   QR H+  +SP R
Sbjct: 713 GAMAANTTSSAQAQRQHENGLSPKR 737


>SB_34943| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 3/93 (3%)
 Frame = +1

Query: 481 HPFILSHY-YWRSRPYASSHPPLAILATS-TRSSNPRFHTPTTPDLTSISINPLNAVLXG 654
           HP + + Y +  +RP ++  P  A    + TR   P  HTP TP  T             
Sbjct: 26  HPRLHAEYIHAYTRPPSTPRPTHAEYTQAYTRRVRPLLHTPVTPKPTHAEYTHAEYTHAE 85

Query: 655 VRAGVKASVGHQRLHQRISP-PRHWAWLKGFRP 750
                   V H RLH  ++P P H  +   + P
Sbjct: 86  YTHAYTRRV-HPRLHTPVTPTPTHAEYTHAYTP 117


>SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3)
          Length = 474

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = -2

Query: 457 CDVSSSPTKVNCDWYFEARGGRKNDSLKIDKIRVAVAFYDGGDVR**LHSDTVRFGFGAS 278
           C  +  P   +  W+F +  G K DS  +  +  +     G  V   +HS  VR G GA+
Sbjct: 275 CVRAHLPNAADQPWFFLSNTGAKIDSNNVQSLLRSFQRSTGVQVSKPIHSTAVRCGSGAT 334

Query: 277 KIE 269
           + E
Sbjct: 335 EEE 337


>SB_30122| Best HMM Match : YadA (HMM E-Value=2)
          Length = 408

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 395 SAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSSRIT 505
           S P  K+P+T     T+A+VT    +++ +PS + +T
Sbjct: 239 SRPETKVPITTIGASTSAEVTTSQRDLMPSPSQAHVT 275


>SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1433

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
 Frame = +2

Query: 269 FDLTGTETKSNSVTVQS---LPNVSSIIKGYRDAYLVNL 376
           F +TG E KS+S+T++    +P V ++ +G  D +LV+L
Sbjct: 485 FTITGQEGKSDSITIRHADVIPRV-ALARGNEDVFLVHL 522


>SB_35094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
 Frame = +1

Query: 565 TRSSNPRFHTPTTPDLTSISINPLNAVLXGVRAGVKASVGH-----QRLHQRISPPR 720
           TR  +PR HTP+TP  T       +A        +     H     +R+HQRI  PR
Sbjct: 70  TRLVHPRLHTPSTPTATHAEYT--HAYKRRAHPRLHTPTTHTPTRARRVHQRIQTPR 124



 Score = 28.3 bits (60), Expect = 8.5
 Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 1/86 (1%)
 Frame = +1

Query: 496 SHYYWRSRPYASSHPPLAILATSTRSSNPRFHTPTTPDLTSISINPLNAVLXGVRAGVKA 675
           +H Y R R +   H P     T  R  + R  TP TP        P +A     R  V  
Sbjct: 91  THAYKR-RAHPRLHTPTTHTPTRARRVHQRIQTPRTP-------RPTHAEYTHARR-VHT 141

Query: 676 SVGHQRLHQRISP-PRHWAWLKGFRP 750
              H RLH  ++P P H  +   + P
Sbjct: 142 RRVHPRLHTPVTPTPTHAEYTHAYTP 167


>SB_5404| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
 Frame = +1

Query: 565 TRSSNPRFHTPTTPDLTSISINPLNAVLXGVRAGVKASVGH-----QRLHQRISPPR 720
           TR  +PR HTP+TP  T       +A        +     H     +R+HQRI  PR
Sbjct: 70  TRLVHPRLHTPSTPTATHAEYT--HAYKRRAHPRLHTPTTHTPTRARRVHQRIQTPR 124



 Score = 28.3 bits (60), Expect = 8.5
 Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 1/86 (1%)
 Frame = +1

Query: 496 SHYYWRSRPYASSHPPLAILATSTRSSNPRFHTPTTPDLTSISINPLNAVLXGVRAGVKA 675
           +H Y R R +   H P     T  R  + R  TP TP        P +A     R  V  
Sbjct: 91  THAYKR-RAHPRLHTPTTHTPTRARRVHQRIQTPRTP-------RPTHAEYTHARR-VHT 141

Query: 676 SVGHQRLHQRISP-PRHWAWLKGFRP 750
              H RLH  ++P P H  +   + P
Sbjct: 142 RRVHPRLHTPVTPTPTHAEYTHAYTP 167


>SB_33345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 728

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 21/52 (40%), Positives = 27/52 (51%)
 Frame = +1

Query: 562 STRSSNPRFHTPTTPDLTSISINPLNAVLXGVRAGVKASVGHQRLHQRISPP 717
           +T SSNP     + P L S+S  PL+A   G  A   +S G  R +Q  SPP
Sbjct: 320 TTYSSNPSTPVGSPPPLASVSERPLSA---GSGASGHSS-GWGRTNQPTSPP 367


>SB_27417| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)
          Length = 538

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 523 YASSHPPLAILATSTRSSNPRFHTPTTPDLTSIS 624
           Y  S PPL++ + ST + +P      TP  TSIS
Sbjct: 502 YKGSEPPLSVCSFSTLNVDPPTPNSPTPISTSIS 535


>SB_23207| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)
          Length = 260

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 523 YASSHPPLAILATSTRSSNPRFHTPTTPDLTSIS 624
           Y  S PPL++ + ST + +P      TP  TSIS
Sbjct: 224 YKGSEPPLSVCSFSTLNVDPPTPNSPTPISTSIS 257


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,836,526
Number of Sequences: 59808
Number of extensions: 505052
Number of successful extensions: 1519
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1515
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)