Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_E14
         (857 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g32380.1 68417.m04611 glycoside hydrolase family 28 protein /...    29   4.0  
At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1 (MSH...    28   9.1  
At1g09550.1 68414.m01071 pectinacetylesterase, putative similar ...    28   9.1  

>At4g32380.1 68417.m04611 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase [Lycopersicon esculentum] GI:4325090;
           contains PF00295: Glycosyl hydrolases family 28
           (polygalacturonases)
          Length = 354

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +2

Query: 536 TLPWRSWLHQPDHQIPDSIHQPPQT*HPFPSIP*TPYXKEFAPGLKPPLVIR 691
           ++P     H  D Q P S++  P    P+   P TP+ +  AP  +PPL  R
Sbjct: 290 SIPITCSFHTEDSQ-PASLNPQPSA--PYAISPTTPHTQPHAPTTQPPLFFR 338


>At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1
           (MSH6-1) (AGAA.3) identical to SP|O04716 DNA mismatch
           repair protein MSH6-1 (AtMsh6-1) cress] {Arabidopsis
           thaliana}
          Length = 1324

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +2

Query: 314 QSLPNVSSIIKGYRDAY 364
           QSLPN+SS IK ++DA+
Sbjct: 854 QSLPNISSSIKYFKDAF 870


>At1g09550.1 68414.m01071 pectinacetylesterase, putative similar to
           pectinacetylesterase precursor GI:1431629 from [Vigna
           radiata]
          Length = 388

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -2

Query: 826 RKGXDYA*MTIIRREACDSSFT*NKGGETP-LAMPSDEGVRYADGASDD 683
           RKG  Y   T++ +E        NK  E P     +   VRY DGAS D
Sbjct: 97  RKGSGYGSSTLMEKELAFLGLLSNKAAENPDFYNWNKVKVRYCDGASFD 145


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,537,735
Number of Sequences: 28952
Number of extensions: 371400
Number of successful extensions: 1039
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)