Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_E13
         (838 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.1  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    22   6.1  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   8.1  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 10/32 (31%), Positives = 12/32 (37%)
 Frame = +3

Query: 693 TKEXKPPXXTKRAKPXXXSPXXPXPFGXGEXP 788
           T+E  PP   KR +     P  P P      P
Sbjct: 633 TEERLPPLPPKRIRKMPSMPLLPRPISCHTTP 664


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = -2

Query: 501 LPPNRVSNEKMKVVVFQRRSRETISHLCYTSHVSLQCQTRVKLNRVFFP 355
           +PP  V   K  V V   R+ E     C  ++  +QC  +    + FFP
Sbjct: 97  MPPEEVVIGKEIVAVC--RNEEYTGDDCQKTYQYVQCHYKQNPEKFFFP 143


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 452 SDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSP 342
           +D R   SP   TP+ + Y   +E+ +  S F  D+P
Sbjct: 21  NDKRIYLSPR--TPIKNVYKNNIETKNQLSPFNIDTP 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,412
Number of Sequences: 438
Number of extensions: 5151
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)