Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_E12
         (890 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g54020.2 68414.m06155 myrosinase-associated protein, putative...    31   1.0  
At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   1.8  
At5g14090.1 68418.m01648 hypothetical protein                          29   3.1  
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    29   5.5  
At5g03360.1 68418.m00289 DC1 domain-containing protein contains ...    28   7.2  
At4g38560.1 68417.m05459 expressed protein                             28   9.6  
At1g14270.1 68414.m01692 CAAX amino terminal protease family pro...    28   9.6  

>At1g54020.2 68414.m06155 myrosinase-associated protein, putative
           strong similarity to myrosinase-associated proteins
           GI:1769968, GI:1769970, GI:1216389,GI:1216391 from
           [Brassica napus]; contains InterPro Entry IPR001087
           Lipolytic enzyme, G-D-S-L family
          Length = 372

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 564 LACGSQAFIATLLFDPSMSALPIIAKQNSPSVGLFT 671
           + C S + +  LL  P +  L  I+ QN P+VGLFT
Sbjct: 1   MECSSVSVLGILLVFPLLHNLVTISGQNLPAVGLFT 36


>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 358 DSSKLTTSDARPSVDWF*SNKSTHPITGQSSD 263
           DS     S  RPS+DWF  N+S +  +  SS+
Sbjct: 223 DSDLSFVSSDRPSMDWFEDNRSNYATSSSSSE 254


>At5g14090.1 68418.m01648 hypothetical protein 
          Length = 361

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 396 DASFKCLPYQLSKSKRAKAGLIQMFSTHRDCEST 497
           +AS +C+ Y+L  S+ AK G      T  DC+ST
Sbjct: 324 EASKRCIQYELRSSRSAKNG-EHWIKTDEDCKST 356


>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 441 RAKAGLIQMFSTHRDCESTAYRSFSIK 521
           RAK  L+Q+  TH+  E T+Y+S  ++
Sbjct: 291 RAKYQLMQLVRTHKGMEDTSYKSIELR 317


>At5g03360.1 68418.m00289 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 1610

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +3

Query: 12  HDHAVRAFLR--PMRCDVLVFELTKKRAPWLILPVVICLSQRLSHACLSASRIKAIPRMA 185
           H+H +  F R  P+ C V    LT  R P+ I P    ++ +   +C S  R+  I R  
Sbjct: 277 HEHTLSLFPRKTPLTCSVCA--LTHTRCPFYICPPCDFVAHQ---SCFSLPRVIRISRHH 331

Query: 186 QYISF 200
             ISF
Sbjct: 332 HRISF 336


>At4g38560.1 68417.m05459 expressed protein
          Length = 521

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 110 SYMLVSKIKPCMSQCKPY*GDTANGSIYQFWFLRSYSVTWITVVILEL 253
           SY + + +   + +     GD A+GS  Q    +SYS+  +  V+LEL
Sbjct: 341 SYKVRASVSSTLQKILDKHGDIASGSKLQSLRTKSYSLETLAAVVLEL 388


>At1g14270.1 68414.m01692 CAAX amino terminal protease family
           protein contains Pfam profile PF02517: CAAX amino
           terminal protease family
          Length = 353

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 96  LILPVVICLSQRLSHACLSASRIKAIPRMAQY 191
           ++  ++ CLSQ  S  CLS SR   +P+   Y
Sbjct: 14  MVSQIISCLSQSSSLLCLSDSRRLILPKTCTY 45


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,903,587
Number of Sequences: 28952
Number of extensions: 346501
Number of successful extensions: 704
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2090971320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)