Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_E11
(904 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 63 3e-12
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 61 1e-11
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 60 2e-11
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 59 5e-11
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 59 5e-11
AF025669-1|AAB81523.1| 243|Tribolium castaneum GABA receptor su... 44 2e-06
AM292361-1|CAL23173.2| 373|Tribolium castaneum gustatory recept... 26 0.35
AJ606487-1|CAE55183.1| 203|Tribolium castaneum Giant protein pr... 25 0.81
AY884065-1|AAX84206.1| 697|Tribolium castaneum laccase 1 protein. 22 5.7
U63132-1|AAB38392.1| 372|Tribolium castaneum decapentaplegic pr... 22 7.6
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 62.9 bits (146), Expect = 3e-12
Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 2/139 (1%)
Frame = +2
Query: 173 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSS 349
ES P ++ LTL + ++ E + A L + W D L WN E+G L ++
Sbjct: 25 ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82
Query: 350 ERLWRPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTC 526
+LW+PDV++ N+A G + V +NGS ++ + M + +P D Q C
Sbjct: 83 NKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGSCLYVPPGIFKSTCKMDITWFPFDDQHC 142
Query: 527 TFKFGSRMHNSDEMDFVID 583
KFGS ++ +++D V++
Sbjct: 143 DMKFGSWTYDGNQLDLVLN 161
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 61.3 bits (142), Expect = 1e-11
Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 2/139 (1%)
Frame = +2
Query: 173 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSS 349
ES P ++ LTL + ++ E + A L + W D L WN E+G L ++
Sbjct: 25 ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82
Query: 350 ERLWRPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTC 526
+LW+PDV++ N+A G + V +NGS ++ + + + +P D Q C
Sbjct: 83 NKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGSCLYVPPGIFKSTCKIDITWFPFDDQHC 142
Query: 527 TFKFGSRMHNSDEMDFVID 583
KFGS ++ +++D V++
Sbjct: 143 DMKFGSWTYDGNQLDLVLN 161
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 60.5 bits (140), Expect = 2e-11
Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 2/139 (1%)
Frame = +2
Query: 173 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSS 349
ES P ++ LTL + ++ E + A L + W D L WN E+G L ++
Sbjct: 25 ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82
Query: 350 ERLWRPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTC 526
+LW+PDV++ N+A G + V + GS ++ + M + +P D Q C
Sbjct: 83 NKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGSCLYVPPGIFKSTCKMDITWFPFDDQHC 142
Query: 527 TFKFGSRMHNSDEMDFVID 583
KFGS ++ +++D V++
Sbjct: 143 DMKFGSWTYDGNQLDLVLN 161
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 58.8 bits (136), Expect = 5e-11
Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Frame = +2
Query: 272 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTA-GDYALRARVSNNGS 445
L + W D L WN E+G L ++ +LW+PDV++ N+A G + V + GS
Sbjct: 56 LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115
Query: 446 VSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVID 583
++ + M + +P D Q C KFGS ++ +++D V++
Sbjct: 116 CLYVPPGIFKSTCKMDITWFPFDDQHCDMKFGSWTYDGNQLDLVLN 161
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 58.8 bits (136), Expect = 5e-11
Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Frame = +2
Query: 272 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTA-GDYALRARVSNNGS 445
L + W D L WN E+G L ++ +LW+PDV++ N+A G + V + GS
Sbjct: 56 LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115
Query: 446 VSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVID 583
++ + M + +P D Q C KFGS ++ +++D V++
Sbjct: 116 CLYVPPGIFKSTCKMDITWFPFDDQHCDMKFGSWTYDGNQLDLVLN 161
>AF025669-1|AAB81523.1| 243|Tribolium castaneum GABA receptor
subunit protein.
Length = 243
Score = 44.0 bits (99), Expect = 2e-06
Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 13/152 (8%)
Frame = +2
Query: 128 SLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNWIDK 295
++S ++DS +YD+ P+ + V +T++ L +++ E + + + W D
Sbjct: 40 NISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDP 99
Query: 296 RLSWNAGEWGCSTWLVSSE---RLWRPDVVLLNAA------ATTAGDYALRARVSNNGSV 448
RL++ G T V SE +W PD +N ATT+ ++ RV ++GS+
Sbjct: 100 RLAYGKRP-GVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RVHHSGSI 155
Query: 449 SWIKRLDISTPISMQLDNWPNDMQTCTFKFGS 544
+ RL I+ M L P D Q C + S
Sbjct: 156 TRSIRLTITASCPMNLQYLPMDRQLCHIEIES 187
>AM292361-1|CAL23173.2| 373|Tribolium castaneum gustatory receptor
candidate 40 protein.
Length = 373
Score = 26.2 bits (55), Expect = 0.35
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 413 ALRARVSNNGSVSWIKRLDISTPISMQLDNWPND 514
A+ + N + SW + ++ + + M LDNW ND
Sbjct: 272 AIEGIIFFNLAKSWPQLIEKWSRVEMALDNWKND 305
>AJ606487-1|CAE55183.1| 203|Tribolium castaneum Giant protein
protein.
Length = 203
Score = 25.0 bits (52), Expect = 0.81
Identities = 19/73 (26%), Positives = 29/73 (39%)
Frame = -2
Query: 252 VDSDSRMLACLKCRVRLTTILESGGDSRSYVARSESIMRDSDVAFSHSAALAIAQVRRNG 73
V S+S CR I + ++ V+ + +DS AF+ +AQV
Sbjct: 56 VSSNSYTPKIKSCRPFKAYIKDPLTLAQGLVSTEMLLKKDSSEAFNEFRTKILAQVHGTN 115
Query: 72 NKNNISRRHFMTT 34
N N + R TT
Sbjct: 116 NGTNKNMRRLSTT 128
>AY884065-1|AAX84206.1| 697|Tribolium castaneum laccase 1 protein.
Length = 697
Score = 22.2 bits (45), Expect = 5.7
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = -1
Query: 688 HCHXSFHLATVLAL 647
HCH FH+ +AL
Sbjct: 603 HCHIEFHVEVGMAL 616
>U63132-1|AAB38392.1| 372|Tribolium castaneum decapentaplegic
protein protein.
Length = 372
Score = 21.8 bits (44), Expect = 7.6
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -1
Query: 460 LYPG-DGAVIRYTGAESVVPGGGC 392
LY G DG+VI E VV G GC
Sbjct: 348 LYLGSDGSVILKNYKEMVVVGCGC 371
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,748
Number of Sequences: 336
Number of extensions: 4340
Number of successful extensions: 23
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25134219
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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