Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_E10
(873 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g54215.1 68414.m06180 proline-rich family protein contains pr... 32 0.58
At1g61080.1 68414.m06877 proline-rich family protein 31 0.76
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica... 30 2.3
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica... 30 2.3
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 29 5.4
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro... 29 5.4
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex... 28 7.1
At4g15200.1 68417.m02329 formin homology 2 domain-containing pro... 28 7.1
At3g55220.1 68416.m06133 splicing factor, putative contains CPSF... 28 7.1
At3g55200.1 68416.m06131 splicing factor, putative contains CPSF... 28 7.1
At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex... 28 7.1
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 28 7.1
At5g21160.1 68418.m02528 La domain-containing protein / proline-... 28 9.4
At4g30460.1 68417.m04325 glycine-rich protein 28 9.4
At4g02590.1 68417.m00353 basic helix-loop-helix (bHLH) family pr... 28 9.4
At3g24540.1 68416.m03082 protein kinase family protein contains ... 28 9.4
>At1g54215.1 68414.m06180 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 169
Score = 31.9 bits (69), Expect = 0.58
Identities = 19/66 (28%), Positives = 22/66 (33%)
Frame = +2
Query: 668 VFPXXPXPGPPPXXAGPXFAVVXXPPXSPPAXXXXCXLXTXXPXXPXXXXLFLXXXSXPP 847
+FP P P PPP P PP PP + T P P + S PP
Sbjct: 37 LFPQSPPPPPPPPPPPPP----PPPPPPPPPPAVNMSVETGIPPPPPPVTDMIKPLSSPP 92
Query: 848 XXXXGP 865
P
Sbjct: 93 PPQPPP 98
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 31.5 bits (68), Expect = 0.76
Identities = 23/82 (28%), Positives = 24/82 (29%)
Frame = +2
Query: 620 PRPWPRWNLPVAMFXXVFPXXPXPGPPPXXAGPXFAVVXXPPXSPPAXXXXCXLXTXXPX 799
P P P P+A P P P PPP P PP PP L P
Sbjct: 436 PLPSPPPTPPIADIAISMPPPPPPPPPPPAVMPLKHFA--PPPPPPLPPAVMPLKHFAPP 493
Query: 800 XPXXXXLFLXXXSXPPXXXXGP 865
P S PP P
Sbjct: 494 PPTPPAFKPLKGSAPPPPPPPP 515
>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 176
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +2
Query: 674 PXXPXPGPPPXXAGPXFAVVXXPPXSPP 757
P P P PP A P V PP +PP
Sbjct: 79 PASPPPATPPPVASPPPPVASPPPATPP 106
>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 191
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +2
Query: 674 PXXPXPGPPPXXAGPXFAVVXXPPXSPP 757
P P P PP A P V PP +PP
Sbjct: 79 PASPPPATPPPVASPPPPVASPPPATPP 106
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/55 (32%), Positives = 20/55 (36%)
Frame = +2
Query: 593 PALSXAGAXPRPWPRWNLPVAMFXXVFPXXPXPGPPPXXAGPXFAVVXXPPXSPP 757
P S P P P ++ P P P PPP P V PP SPP
Sbjct: 434 PVYSPPPPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPPPPPPPPPVYSPPPPSPP 488
Score = 27.9 bits (59), Expect = 9.4
Identities = 19/78 (24%), Positives = 24/78 (30%), Gaps = 2/78 (2%)
Frame = +2
Query: 620 PRPWPRWNLPVAMFXXVFPXXPXP--GPPPXXAGPXFAVVXXPPXSPPAXXXXCXLXTXX 793
P P P ++ P + P P P PPP P PP PP
Sbjct: 411 PPPAPIFSTPPTLTSPPPPSPPPPVYSPPPPPPPPPPVYSPPPPPPPPPPPPVYSPPPPP 470
Query: 794 PXXPXXXXLFLXXXSXPP 847
P P ++ PP
Sbjct: 471 PPPPPPPPVYSPPPPSPP 488
>At1g31810.1 68414.m03904 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|P48608 Diaphanous protein {Drosophila
melanogaster}; contains Pfam profile PF02181: Formin
Homology 2(FH2) Domain
Length = 1201
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = +2
Query: 620 PRPWPRWNLPVAMFXXVFPXXPXPGPPPXXAGPXFAVVXXPPXSPP 757
P P P ++P + P P P PPP + + PP PP
Sbjct: 579 PPPLPSRSIPPPLAQPPPPRPPPPPPPPPSSRSIPSPSAPPPPPPP 624
>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 699
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/46 (32%), Positives = 18/46 (39%)
Frame = +2
Query: 620 PRPWPRWNLPVAMFXXVFPXXPXPGPPPXXAGPXFAVVXXPPXSPP 757
P P P + P ++ P P PPP P V PP PP
Sbjct: 518 PPPAPVNSPPPPVYSPPPPPPPVHSPPPPVHSPPPPPVYSPPPPPP 563
>At4g15200.1 68417.m02329 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 600
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +2
Query: 674 PXXPXPGPPPXXAGPXFAVVXXPPXSPP 757
P P P PPP P + PP +PP
Sbjct: 274 PPQPPPPPPPKPQPPPPPKIARPPPAPP 301
>At3g55220.1 68416.m06133 splicing factor, putative contains CPSF A
subunit region (PF03178); contains weak WD-40 repeat
(PF00400); similar to Splicing factor 3B subunit 3
(SF3b130)/spliceosomal protein/Splicing factor 3B
subunit 3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
EMBL:HSAJ1443_1
Length = 1214
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 391 GRGERSPRRWLQPRLAVPRQASTSVPRTPA 302
GRG RS R L+P LA+ A + +P P+
Sbjct: 426 GRGPRSSLRILRPGLAITEMAVSQLPGQPS 455
>At3g55200.1 68416.m06131 splicing factor, putative contains CPSF A
subunit region (PF03178); contains weak WD-40 repeat
(PF00400); similar to Splicing factor 3B subunit 3
(SF3b130)/spliceosomal protein/Splicing factor 3B
subunit 3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
EMBL:HSAJ1443_1
Length = 1214
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 391 GRGERSPRRWLQPRLAVPRQASTSVPRTPA 302
GRG RS R L+P LA+ A + +P P+
Sbjct: 426 GRGPRSSLRILRPGLAITEMAVSQLPGQPS 455
>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycsimilar to extensin-like protein [Lycopersicon
esculentum] gi|5917664|gb|AAD55979; contains
leucine-rich repeats, Pfam:PF00560; contains proline
rich extensin domains, INTERPRO:IPR002965
Length = 470
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +2
Query: 674 PXXPXPGPPPXXAGPXFAVVXXPPXSPPA 760
P P P PPP P V PP PP+
Sbjct: 391 PPPPPPPPPPPPPPPPPYVYPSPPPPPPS 419
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Frame = +2
Query: 620 PRPWPRWNLPVAMFXXVFPXXPXPGPPP-XXAGPXFAVVXXPPXSPP 757
P P P P + P P P PPP P V PP SPP
Sbjct: 395 PPPPPPPPPPPPPYVYPSPPPPPPSPPPYVYPPPPPPYVYPPPPSPP 441
>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
non-consensus splice site at the intron:exon boundary
(AT:exon)
Length = 247
Score = 28.3 bits (60), Expect = 7.1
Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Frame = +2
Query: 593 PALSXAGAXPRP--WPRWNLPVAMFXXVFPXXPXPGPPPXXAGPXFAVVXXP--PXSPP 757
P +S A P+P P + P V P PPP A P A P P SPP
Sbjct: 89 PVISPATPPPQPPQSPPASAPTVSPPPVSPPPAPTSPPPTPASPPPAPASPPPAPASPP 147
>At5g21160.1 68418.m02528 La domain-containing protein /
proline-rich family protein contains proline-rich
extensin domains, INTERPRO:IPR002965, PF05383: La domain
Length = 826
Score = 27.9 bits (59), Expect = 9.4
Identities = 19/58 (32%), Positives = 21/58 (36%), Gaps = 8/58 (13%)
Frame = +2
Query: 608 AGAXPRPWPRWNL----PVAMFXXVFPXXPXPGPP----PXXAGPXFAVVXXPPXSPP 757
+G +P PR N P P P P PP P AGP F PP P
Sbjct: 106 SGRHSKPGPRSNQNGPPPPPYLVHAVPYHPPPFPPMVPLPHAAGPDFPYAPYPPYPVP 163
>At4g30460.1 68417.m04325 glycine-rich protein
Length = 162
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/39 (33%), Positives = 16/39 (41%)
Frame = -3
Query: 775 AGGXXSRGXGXXXXHHGEXGAGXXRGGARXGXSGKDXXE 659
+G RG G H G G G RGG +G+ E
Sbjct: 111 SGSGRGRGSGGGGGHGGGGGGGGGRGGGGGSGNGEGYGE 149
>At4g02590.1 68417.m00353 basic helix-loop-helix (bHLH) family
protein similar to A. thaliana putative protein
F6I18.110, GenBank accession number 2980768
Length = 310
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -1
Query: 213 LGLTNVSMSQMQGQVDYDFGVGGGVPIVRCEERVDHEG 100
LGL N S S G D G+GGG P + + EG
Sbjct: 24 LGLPNFSASSAAGLSGVDGGLGGGAPPMMLQLGSGEEG 61
>At3g24540.1 68416.m03082 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 509
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 120 PRNVRSGLPPRLQNRSQPDPA 182
PR+ + PPRL NR+ P PA
Sbjct: 75 PRSPSTSTPPRLGNRNPPPPA 95
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,321,946
Number of Sequences: 28952
Number of extensions: 363534
Number of successful extensions: 1504
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1402
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2048424000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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