Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_E09
(851 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 46 5e-07
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 44 2e-06
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 43 3e-06
AF025669-1|AAB81523.1| 243|Tribolium castaneum GABA receptor su... 43 4e-06
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 41 1e-05
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 41 1e-05
AM292361-1|CAL23173.2| 373|Tribolium castaneum gustatory recept... 26 0.33
AJ606487-1|CAE55183.1| 203|Tribolium castaneum Giant protein pr... 25 0.57
AY531876-2|AAT08871.1| 340|Tribolium castaneum tyrosine recombi... 24 1.8
U63132-1|AAB38392.1| 372|Tribolium castaneum decapentaplegic pr... 22 7.1
EF633444-1|ABR32189.1| 721|Tribolium castaneum heat shock prote... 21 9.4
DQ211693-1|ABB16909.1| 314|Tribolium castaneum dorsocross protein. 21 9.4
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 45.6 bits (103), Expect = 5e-07
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Frame = +2
Query: 224 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPGVVLLNAA-ATTA 397
++ E + A L + W D L WN E+ G ++ +LW+P V++ N+A
Sbjct: 42 DVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFD 101
Query: 398 GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTC 520
G + V +NGS ++ + M + +P D Q C
Sbjct: 102 GTFQTNVVVKHNGSCLYVPPGIFKSTCKMDITWFPFDDQHC 142
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 44.0 bits (99), Expect = 2e-06
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Frame = +2
Query: 224 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPGVVLLNAA-ATTA 397
++ E + A L + W D L WN E+ G ++ +LW+P V++ N+A
Sbjct: 42 DVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFD 101
Query: 398 GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTC 520
G + V +NGS ++ + + + +P D Q C
Sbjct: 102 GTFQTNVVVKHNGSCLYVPPGIFKSTCKIDITWFPFDDQHC 142
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 43.2 bits (97), Expect = 3e-06
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
Frame = +2
Query: 224 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPGVVLLNAA-ATTA 397
++ E + A L + W D L WN E+ G ++ +LW+P V++ N+A
Sbjct: 42 DVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFD 101
Query: 398 GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTC 520
G + V + GS ++ + M + +P D Q C
Sbjct: 102 GTFQTNVVVKHGGSCLYVPPGIFKSTCKMDITWFPFDDQHC 142
>AF025669-1|AAB81523.1| 243|Tribolium castaneum GABA receptor
subunit protein.
Length = 243
Score = 42.7 bits (96), Expect = 4e-06
Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 13/150 (8%)
Frame = +2
Query: 122 SLSLMIDSLLATYDRDSPPD---SKIVVNLTLH-LRHANIRESESTVRIQADLQMNWIDK 289
++S ++DS +YD+ P+ + V +T++ L +++ E + + + W D
Sbjct: 40 NISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDP 99
Query: 290 RLSWNAGEWGCSTWLVSSE---RLWRPGVVLLNAA------ATTAGDYALRARVSNNGSV 442
RL++ G T V SE +W P +N ATT+ ++ RV ++GS+
Sbjct: 100 RLAYGKRP-GVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RVHHSGSI 155
Query: 443 SWIKRLDISTPISMQLDNWPNDMQTCTFQV 532
+ RL I+ M L P D Q C ++
Sbjct: 156 TRSIRLTITASCPMNLQYLPMDRQLCHIEI 185
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 41.1 bits (92), Expect = 1e-05
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Frame = +2
Query: 266 LQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPGVVLLNAA-ATTAGDYALRARVSNNGS 439
L + W D L WN E+ G ++ +LW+P V++ N+A G + V + GS
Sbjct: 56 LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115
Query: 440 VSWIKRLDISTPISMQLDNWPNDMQTC 520
++ + M + +P D Q C
Sbjct: 116 CLYVPPGIFKSTCKMDITWFPFDDQHC 142
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 41.1 bits (92), Expect = 1e-05
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Frame = +2
Query: 266 LQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPGVVLLNAA-ATTAGDYALRARVSNNGS 439
L + W D L WN E+ G ++ +LW+P V++ N+A G + V + GS
Sbjct: 56 LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115
Query: 440 VSWIKRLDISTPISMQLDNWPNDMQTC 520
++ + M + +P D Q C
Sbjct: 116 CLYVPPGIFKSTCKMDITWFPFDDQHC 142
>AM292361-1|CAL23173.2| 373|Tribolium castaneum gustatory receptor
candidate 40 protein.
Length = 373
Score = 26.2 bits (55), Expect = 0.33
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 407 ALRARVSNNGSVSWIKRLDISTPISMQLDNWPND 508
A+ + N + SW + ++ + + M LDNW ND
Sbjct: 272 AIEGIIFFNLAKSWPQLIEKWSRVEMALDNWKND 305
>AJ606487-1|CAE55183.1| 203|Tribolium castaneum Giant protein
protein.
Length = 203
Score = 25.4 bits (53), Expect = 0.57
Identities = 19/73 (26%), Positives = 29/73 (39%)
Frame = -3
Query: 246 VDSDSRMLACLKCRVRLTTILESGGESRSYVARSESIMRDSDVAFSHSAALAIAQVRRNG 67
V S+S CR I + ++ V+ + +DS AF+ +AQV
Sbjct: 56 VSSNSYTPKIKSCRPFKAYIKDPLTLAQGLVSTEMLLKKDSSEAFNEFRTKILAQVHGTN 115
Query: 66 NKNNISRRHFMTT 28
N N + R TT
Sbjct: 116 NGTNKNMRRLSTT 128
>AY531876-2|AAT08871.1| 340|Tribolium castaneum tyrosine
recombinase protein.
Length = 340
Score = 23.8 bits (49), Expect = 1.8
Identities = 11/49 (22%), Positives = 24/49 (48%)
Frame = -3
Query: 228 MLACLKCRVRLTTILESGGESRSYVARSESIMRDSDVAFSHSAALAIAQ 82
+++ L C + T +L S GE+R ++ + S + S + +A+
Sbjct: 228 VVSTLSCYLERTELLRSSGETRLFLTHRKPFHPASTQSLSRWIKMVLAE 276
>U63132-1|AAB38392.1| 372|Tribolium castaneum decapentaplegic
protein protein.
Length = 372
Score = 21.8 bits (44), Expect = 7.1
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -2
Query: 454 LYPG-DGAVIRYTGAESVVPGGGC 386
LY G DG+VI E VV G GC
Sbjct: 348 LYLGSDGSVILKNYKEMVVVGCGC 371
>EF633444-1|ABR32189.1| 721|Tribolium castaneum heat shock protein
90 protein.
Length = 721
Score = 21.4 bits (43), Expect = 9.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 600 ESGAWDVTALSSAVXSQDRGE 662
E W+ +A S +QDRGE
Sbjct: 151 EQYVWESSAGGSFTVTQDRGE 171
>DQ211693-1|ABB16909.1| 314|Tribolium castaneum dorsocross protein.
Length = 314
Score = 21.4 bits (43), Expect = 9.4
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +3
Query: 306 QGSGAAALGWCPRN 347
+ S A ALGW P N
Sbjct: 153 KASTAQALGWAPTN 166
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,905
Number of Sequences: 336
Number of extensions: 3641
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23555563
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -