Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_E09
(851 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 34 0.17
07_01_0284 - 2082249-2082256,2082496-2083009 31 1.5
12_01_0524 - 4167867-4168445 30 2.7
08_02_0082 + 12059692-12060209,12060484-12060973 30 2.7
01_06_1147 + 34892415-34893702,34894051-34894676 29 3.6
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 29 6.2
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468... 28 8.2
04_01_0530 - 6928528-6929500,6929514-6930964 28 8.2
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.2
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 28 8.2
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 33.9 bits (74), Expect = 0.17
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -2
Query: 337 HQPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQM-QGQVDYDFGVGG 173
H P AAA P VP++ P L + S GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>07_01_0284 - 2082249-2082256,2082496-2083009
Length = 173
Score = 30.7 bits (66), Expect = 1.5
Identities = 22/60 (36%), Positives = 30/60 (50%)
Frame = +3
Query: 387 QPPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARFKFGSRMHNSDEMD 566
+PPP + +AP+ I AP AW LQF + I P + RL F FG + E+D
Sbjct: 73 EPPPPPSTTAPI--IAAP-----AWAPLLQFAATQQIIPISARL--FVFGVSKKRTTELD 123
>12_01_0524 - 4167867-4168445
Length = 192
Score = 29.9 bits (64), Expect = 2.7
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Frame = -2
Query: 364 ARPPQAFRGH---QPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVD 194
A A GH QPS+AA P + + + + YSH G + S + G +
Sbjct: 91 ANAAAAAAGHVERQPSSAAVAPLPSSTNLKSAVRSAMGSYSHSGTRRVHFGDSTVLG--E 148
Query: 193 YDFGVGGGVPIVRCEERVDHEGQ*C 119
G GGG P V EE + E + C
Sbjct: 149 KAAGAGGGEPAV-VEEVEEEEEKEC 172
>08_02_0082 + 12059692-12060209,12060484-12060973
Length = 335
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +2
Query: 350 LWRPGVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPISMQLDNWP 502
+W PGVV ++ + D L A + +G+ +W+K L +T M WP
Sbjct: 65 MWAPGVVAVHRSFAPRADDVLVASLQKSGT-TWLKALTFAT---MARGAWP 111
>01_06_1147 + 34892415-34893702,34894051-34894676
Length = 637
Score = 29.5 bits (63), Expect = 3.6
Identities = 18/37 (48%), Positives = 21/37 (56%)
Frame = +3
Query: 339 PRNACGGLAWYC*TRLQPPPGTTLSAPVYLITAPSPG 449
P N+ G A+ C LQP PGT S P T+PSPG
Sbjct: 210 PANSFLGNAFLCGFPLQPCPGTAPS-PSPSPTSPSPG 245
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 235 VRVHRANTGRSSNELDRQTTELERRGVGLQHLAGVLGTL 351
V+ H R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>09_04_0190 -
15443764-15443838,15445360-15445458,15446396-15446891,
15449436-15449479,15449999-15450104,15450243-15450314,
15450474-15450588,15451182-15451407
Length = 410
Score = 28.3 bits (60), Expect = 8.2
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +1
Query: 241 VHRANTGRSSNELDRQTTELERRGVG 318
V+ A +SS+ L ++TTE++R G+G
Sbjct: 371 VNEAKETKSSSSLPQKTTEMQRSGIG 396
>04_01_0530 - 6928528-6929500,6929514-6930964
Length = 807
Score = 28.3 bits (60), Expect = 8.2
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +1
Query: 70 VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 210
+SP+LCY+ C RK+ +L+ + SGLPP++ S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 419 GRGERSPRRWLQPRLAVPRQASTSVPRTP 333
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -1
Query: 416 RGERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPTPLRSNS 294
R RSPRR P R + + R+PA S +P+R++S
Sbjct: 224 RDSRSPRRSASPPNGRNRSPTPNASRSPAPRDSRSPMRADS 264
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,474,714
Number of Sequences: 37544
Number of extensions: 503903
Number of successful extensions: 1611
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1610
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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