Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_E07
(850 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 213 1e-55
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 213 1e-55
10_02_0199 + 6668902-6669293,6669825-6669882 34 0.16
08_02_1278 - 25838146-25839411 32 0.66
03_05_0366 - 23505755-23506441 31 1.2
03_06_0454 + 34044351-34044499,34045495-34045510,34045640-340458... 30 2.7
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 30 2.7
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657 30 2.7
12_02_0882 - 23978169-23979251 29 4.7
01_01_1198 - 9643469-9643585,9643740-9643805,9643905-9644489,964... 29 4.7
06_01_0017 + 189346-189561,189614-189905,190024-190043 29 6.2
04_01_0588 + 7657510-7657992,7658397-7658843 29 6.2
02_04_0457 + 23093020-23093343,23093798-23093806 29 6.2
01_06_0952 - 33310262-33310273,33310468-33311142 29 6.2
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 213 bits (521), Expect = 1e-55
Identities = 100/173 (57%), Positives = 119/173 (68%)
Frame = +3
Query: 183 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 362
VF+AP+RPD+V VH +S N RQPY VS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR
Sbjct: 31 VFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHR 90
Query: 363 SGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEK 542
+GQGAFGNMCRGGRMFAPTK WR+WH ARGH IE
Sbjct: 91 AGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRRVAVASALAATSVPSLVLARGHRIET 150
Query: 543 IPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNR 701
+PELPLV++D + I KT QA+ L+++ A++D K S +R GKGKMRNR
Sbjct: 151 VPELPLVISDSAESIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGKGKMRNR 203
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 213 bits (521), Expect = 1e-55
Identities = 101/176 (57%), Positives = 120/176 (68%)
Frame = +3
Query: 174 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 353
+P V +APIRPD+V H +S N RQPY VS+ AGHQTSAESWGTGRAV+RIPRV GGG
Sbjct: 27 MPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGG 86
Query: 354 THRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHI 533
THR+GQGAFGNMCRGGRMFAPTK WRRWH ARGH
Sbjct: 87 THRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRLRRIAVASALAATAVPSLVLARGHR 146
Query: 534 IEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNR 701
IE +PE PLVV+D ++ I KT Q++ L+++ A++D K S +RAGKGKMRNR
Sbjct: 147 IEGVPEFPLVVSDSIESIEKTAQSIKVLKQIGAYADAEKTKDSVAIRAGKGKMRNR 202
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 33.9 bits (74), Expect = 0.16
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +3
Query: 294 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 404
A+SW TGRA A + R R GG R A N G R
Sbjct: 36 AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>08_02_1278 - 25838146-25839411
Length = 421
Score = 31.9 bits (69), Expect = 0.66
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = -3
Query: 623 APQEDDSLFGLVDLLDFVGYNQGKLGNLFNNVSSSL 516
A +E LF L+D+LD V +G+L LF+ S++L
Sbjct: 89 AAREPQRLFRLLDMLDAVARERGRLDELFSGESATL 124
>03_05_0366 - 23505755-23506441
Length = 228
Score = 31.1 bits (67), Expect = 1.2
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +3
Query: 180 FVFKAPIRPDLVNDVHVSMSKNSR-QPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGT 356
++ AP D +V S + R P C S E + +AES TG A R R+ G T
Sbjct: 108 WIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPT 167
Query: 357 HRSGQGA 377
+ + + A
Sbjct: 168 NDNDEEA 174
>03_06_0454 + 34044351-34044499,34045495-34045510,34045640-34045862,
34045969-34046092,34046168-34046294,34046821-34046882,
34046972-34048023,34048167-34048556,34048667-34052628,
34052710-34052796,34052885-34053004,34053096-34053152
Length = 2122
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = -2
Query: 738 EDYEGPLTLDTTDGCAFYPYQHEDAE---TCTP*GYQTMP 628
+ YEGPL + + GC YP+ ++E P GY P
Sbjct: 1916 DQYEGPLPSEESSGCLDYPHDDHNSEKEDIHQPDGYAASP 1955
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 29.9 bits (64), Expect = 2.7
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -2
Query: 399 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 292
HH + H + YE+ + H + RQ QY QH
Sbjct: 150 HHQQYQQHHHQQQYEHQNRIHFQHHRQQQQYQQHQH 185
>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
Length = 390
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/34 (32%), Positives = 14/34 (41%)
Frame = -2
Query: 372 PDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 271
P + +HHHGH + Q H G PP
Sbjct: 33 PQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPPPP 66
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -2
Query: 369 DRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 271
D +HHH H G H Q QH PP
Sbjct: 32 DPQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPP 64
>12_02_0882 - 23978169-23979251
Length = 360
Score = 29.1 bits (62), Expect = 4.7
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = -3
Query: 230 NVNIIDQVRTD-GRLEHEREGLGCXPAPSHSSLNTPTXKGRATDRLISLL*RSYTSEIYT 54
++NI +Q + R+++E+ GL P S P +TD L SL+ +S+ T
Sbjct: 286 DINIPEQRESSVTRMQNEKLGLNLLPRNDSSGHEVPILSVSSTDDLNSLIPTDTSSDKDT 345
Query: 53 NSGDKD 36
NS D
Sbjct: 346 NSNVAD 351
>01_01_1198 -
9643469-9643585,9643740-9643805,9643905-9644489,
9645159-9645994,9646597-9646783,9647572-9647737,
9648431-9648520,9649122-9649184,9649277-9649413,
9649835-9650349,9651130-9651231,9651581-9651602
Length = 961
Score = 29.1 bits (62), Expect = 4.7
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = +1
Query: 604 LSSS*GASRHGLISLRCTSLSVFVLVRVKCATVRRIQRKGXLIIFKQGSGSDSRLSA 774
LSSS G + HGL L S+S+F++ + RR+ R+ +K G+ RLS+
Sbjct: 341 LSSSVGCALHGL--LGSNSVSLFLITKDGLLVERRLHRRKWK-WYKHGAPKSQRLSS 394
>06_01_0017 + 189346-189561,189614-189905,190024-190043
Length = 175
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -3
Query: 536 NNVSSSLNERWDAGSSNGCRQGR--SPLSEVDATVPTP 429
N+ +S L+ +WDAGS + SPLS V A P
Sbjct: 103 NDSTSKLSFKWDAGSCSSASSSAMYSPLSAVSAPAKAP 140
>04_01_0588 + 7657510-7657992,7658397-7658843
Length = 309
Score = 28.7 bits (61), Expect = 6.2
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Frame = +3
Query: 216 NDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRV---RGGGTHRSGQGAFGN 386
+D+ ++ SR + + ++S+ W G R+ + GGG R G
Sbjct: 201 HDIQWGDNQPSRSSGVLPSSSEWRSSSSRWDLGEITRRMDTLDMQMGGGQQRRPPAEDGL 260
Query: 387 MCRGGRMFAPTKPWRRW 437
P PWRRW
Sbjct: 261 GWASSWFGRPNLPWRRW 277
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +3
Query: 279 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 383
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
>01_06_0952 - 33310262-33310273,33310468-33311142
Length = 228
Score = 28.7 bits (61), Expect = 6.2
Identities = 20/59 (33%), Positives = 27/59 (45%)
Frame = -3
Query: 833 PXFRRFSLLTFXEPQXPGNVAERRESDPDPCLKIMRXPLRWIRRTVAHFTLTSTKTLRL 657
P + SL F P+ + A RR DP+ L +R RW RR+ A T + RL
Sbjct: 40 PAYSSLSLAPF--PRTSCDAASRRVVDPNLRLAKLRSSPRWRRRSAALSTSVFPRLRRL 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,696,969
Number of Sequences: 37544
Number of extensions: 507791
Number of successful extensions: 1724
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1715
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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