Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_E07
(850 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0) 234 8e-62
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.17
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 33 0.22
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45) 31 0.89
SB_39179| Best HMM Match : Sigma70_r2 (HMM E-Value=5e-27) 30 2.7
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2) 29 4.8
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95) 29 4.8
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0) 29 4.8
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05) 28 8.3
SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8) 28 8.3
SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15) 28 8.3
SB_8252| Best HMM Match : rve (HMM E-Value=0.13) 28 8.3
>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
Length = 299
Score = 234 bits (572), Expect = 8e-62
Identities = 115/203 (56%), Positives = 137/203 (67%)
Frame = +3
Query: 174 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 353
LP VFKAPIRPDLVN VH +++KN RQPY V+K AGHQTSAESWGTGRAVARIPRVRGGG
Sbjct: 21 LPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQTSAESWGTGRAVARIPRVRGGG 80
Query: 354 THRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHI 533
THRSGQGAFGNMCRGGRMFAPTK WR+WH ARGH
Sbjct: 81 THRSGQGAFGNMCRGGRMFAPTKTWRKWHTKVNVQQRRFAVCSALAASALPALIMARGHR 140
Query: 534 IEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRPSYP 713
IEKI E+PLV++D ++ + KT AV L+ + A+ D+ K S+++RAGKGKMRNR +
Sbjct: 141 IEKIAEVPLVISDAIESVTKTSAAVKLLKAVNAYEDVEKCIDSKKIRAGKGKMRNRRTVM 200
Query: 714 A*GXPHNLQTRIRV*LXPFRNIP 782
G P + + FRN+P
Sbjct: 201 RKG-PLIIYNNDQGLRQAFRNLP 222
>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 33.9 bits (74), Expect = 0.17
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -2
Query: 384 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 271
Y +HP T+ YH H R H Q+P + H + Q P
Sbjct: 232 YHQHPQVTHRYHQHPQVTH-RYHQQHPQVTHRYQYQHP 268
Score = 32.7 bits (71), Expect = 0.39
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 384 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQ 277
Y +HP T+ YHH H + ++ Q+P + H + Q
Sbjct: 413 YHQHPQLTHRYHHQ-HPQVIHRYHQHPQVTHRYHQQ 447
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -2
Query: 375 HPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQP 274
HP T+ YH H R H Q+P + H + P
Sbjct: 406 HPQVTHRYHQHPQLTH-RYHHQHPQVIHRYHQHP 438
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 33.5 bits (73), Expect = 0.22
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -2
Query: 399 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWF 286
HH CY H Y Y+ H H + R H YP +H++
Sbjct: 20 HHYCCYCHH---RYCYYRHHHYCWYRHHYHYPCYRHYY 54
>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
Length = 453
Score = 31.5 bits (68), Expect = 0.89
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 399 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 316
HH RH R + +HHH H E+ R+H
Sbjct: 325 HHQRHRHRHRHR-HRHHHHHHHEYNRRH 351
>SB_39179| Best HMM Match : Sigma70_r2 (HMM E-Value=5e-27)
Length = 255
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 824 RRFSLLTFXEPQXPGNVAERRESDPDPCLKIMRXPLRWIRRTVAHFTLTSTKTLRL-VHL 648
R +LL E G + + DP+ + WIR+T+ + T+T+RL +H+
Sbjct: 184 RGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHI 243
>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -2
Query: 408 TYVHHDTCYRRHPDRTYEYHHHGHA 334
TY H DT R+HPD H HA
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHA 147
>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
Length = 694
Score = 29.1 bits (62), Expect = 4.8
Identities = 9/35 (25%), Positives = 14/35 (40%)
Frame = -2
Query: 411 RTYVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVQY 307
R + HH + H + +HHH H H +
Sbjct: 209 RHHQHHQHHHHHHHQHNHHHHHHNHHHHHHHHYHH 243
>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
Length = 1080
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 288 TSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 404
T +E +G ++ R PR RGGG G G G RGGR
Sbjct: 983 TPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022
>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2325
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 207 DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARI 332
D+ NDV ++++ + PY + H T E TG+ +A++
Sbjct: 2034 DVTNDVTINVTDVNEAPYDIRLVPSHVTVKEDIRTGQCIAQV 2075
>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
Length = 1098
Score = 28.3 bits (60), Expect = 8.3
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +3
Query: 306 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 434
G GR + R P GGG R G +G M GG P W R
Sbjct: 271 GQGRGMGRGP---GGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 310
>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
Length = 193
Score = 28.3 bits (60), Expect = 8.3
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -2
Query: 399 HHDTCYRRHPDRTYEYHHH 343
HH YR H + Y +HHH
Sbjct: 96 HHHQHYRHHRHQHYRHHHH 114
>SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)
Length = 715
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +3
Query: 201 RPDLVNDVHVSMSKNSRQPYC-VSKEAGHQTSAESWGTGRAV 323
RP +SM K R+PY + +E GH+ S T R V
Sbjct: 156 RPGCDTHEKISMEKRKREPYLELIRETGHERQRRSVSTERNV 197
>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
Length = 264
Score = 28.3 bits (60), Expect = 8.3
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 405 YVHHDTCYRRHPDRTYEYHHHGH 337
Y HH +RR R + +HHH H
Sbjct: 233 YHHHHHHHRRRRRRRHHHHHHHH 255
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,473,901
Number of Sequences: 59808
Number of extensions: 520865
Number of successful extensions: 1462
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1409
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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