Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_E07
(850 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 218 3e-57
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 218 4e-57
At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 30 1.7
At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 30 1.7
At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp... 29 3.9
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp... 29 3.9
At4g39500.1 68417.m05586 cytochrome P450, putative simialrity to... 29 3.9
At4g39480.1 68417.m05585 cytochrome P450 family protein contains... 28 6.8
At1g26400.1 68414.m03220 FAD-binding domain-containing protein s... 28 6.8
At1g18670.1 68414.m02330 protein kinase family protein contains ... 28 6.8
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr... 28 9.0
At5g01010.1 68418.m00001 expressed protein 28 9.0
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy... 28 9.0
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 218 bits (533), Expect = 3e-57
Identities = 108/203 (53%), Positives = 127/203 (62%)
Frame = +3
Query: 174 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 353
LP V AP+RPD+VN VH +S NSRQPY VSK+AGHQTSAESWGTGRAV+RIPRV GGG
Sbjct: 30 LPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGG 89
Query: 354 THRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHI 533
THR+GQ AFGNMCRGGRMFAPTK WRRWH ARGH
Sbjct: 90 THRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAVPALVMARGHK 149
Query: 534 IEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRPSYP 713
IE +PE+PLVV+D + + KT A+ L+++ A+ D K S +R GKGKMRNR
Sbjct: 150 IENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYIS 209
Query: 714 A*GXPHNLQTRIRV*LXPFRNIP 782
G T + FRN+P
Sbjct: 210 RKGPLVVFGTEGAKIVKAFRNLP 232
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 218 bits (532), Expect = 4e-57
Identities = 108/203 (53%), Positives = 127/203 (62%)
Frame = +3
Query: 174 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 353
LP V AP+RPD+VN VH +S NSRQPY VSK+AGHQTSAESWGTGRAV+RIPRV GGG
Sbjct: 29 LPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGG 88
Query: 354 THRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHI 533
THR+GQ AFGNMCRGGRMFAPTK WRRWH ARGH
Sbjct: 89 THRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAVPALVMARGHK 148
Query: 534 IEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRPSYP 713
IE +PE+PLVV+D + + KT A+ L+++ A+ D K S +R GKGKMRNR
Sbjct: 149 IENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYIS 208
Query: 714 A*GXPHNLQTRIRV*LXPFRNIP 782
G T + FRN+P
Sbjct: 209 RKGPLVVYGTEGSKIVKAFRNLP 231
>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 669
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +2
Query: 395 WWTYVRPHEALAALAPSRQPPTAESGLGGSRCCYRRPSARSG*RTHY*KDSRASLGCSRQ 574
WW +V LA+ APS P + L SR C P ++S + H D+ R
Sbjct: 465 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLC-PSPLSQSSKQHHIRLDNHFDTSTPRS 523
Query: 575 S 577
S
Sbjct: 524 S 524
>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 668
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +2
Query: 395 WWTYVRPHEALAALAPSRQPPTAESGLGGSRCCYRRPSARSG*RTHY*KDSRASLGCSRQ 574
WW +V LA+ APS P + L SR C P ++S + H D+ R
Sbjct: 464 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLC-PSPLSQSSKQHHIRLDNHFDTSTPRS 522
Query: 575 S 577
S
Sbjct: 523 S 523
>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 844
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -2
Query: 411 RTYVHHDTCYRRHPDRTY-EYHHHGHAEFGRQHVQYPMIQH 292
R++ H + +H D + E+HHH H R+H ++H
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSSDVEH 775
>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 843
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -2
Query: 411 RTYVHHDTCYRRHPDRTY-EYHHHGHAEFGRQHVQYPMIQH 292
R++ H + +H D + E+HHH H R+H ++H
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSSDVEH 775
>At4g39500.1 68417.m05586 cytochrome P450, putative simialrity to
cytochrome P450 CYP86A1, Arabidopsis thaliana,
EMBL:X90458
Length = 469
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 573 KVQEINKTKQAVIFLRRLKA-WSDILKVYKSQRLRAGKGKMRNRPSY 710
KVQ +K + L R++A W D +K +R + KG +R+ PS+
Sbjct: 356 KVQANSKIIICLYALGRMRAVWGDDALEFKPERWVSDKGSLRHEPSF 402
>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
Pfam profile: PF00067 cytochrome P450
Length = 989
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 171 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 266
P+PF K+P +PD++ H + NSR +C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414
>At1g26400.1 68414.m03220 FAD-binding domain-containing protein
similar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 527
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -1
Query: 601 CLVLLISWTLSATTKGSSGIFS 536
CLVLL+S +A TK SGIF+
Sbjct: 9 CLVLLVSILRAAVTKPDSGIFT 30
>At1g18670.1 68414.m02330 protein kinase family protein contains
Protein kinases ATP-binding region signature,
PROSITE:PS00107 and Serine/Threonine protein kinases
active-site signature, PROSITE:PS00108
Length = 662
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +2
Query: 512 RSG*RTHY*KDSRASLGCSRQSPRDQQDQTGCHLPEAPQGMV*YP*GVQVSASS 673
R+G H DS ++L Q P + + H+ A QG V + +QVS SS
Sbjct: 491 RNGHSVHNSIDSDSTLFEKMQKPSNHEKDEASHVKNASQGDVPFSGPLQVSVSS 544
>At5g17650.1 68418.m02069 glycine/proline-rich protein
glycine/proline-rich protein GPRP - Arabidopsis
thaliana, EMBL:X84315
Length = 173
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -2
Query: 399 HHDTCYRRHPDRTYEYHHHGHAEF 328
HH Y H Y Y +HGH +F
Sbjct: 122 HHHGHYGHHHGHGYGYGYHGHGKF 145
>At5g01010.1 68418.m00001 expressed protein
Length = 409
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = -3
Query: 296 STGLVTSLLAHAVGLPRVLGHRNVNIIDQVR-TDGRLEHEREGLG 165
+TG+ +L+ + VG+P+VL ++ I Q+ DG +E +RE G
Sbjct: 203 ATGVYKTLVKYLVGVPQVL----LDFIRQINDDDGPMEEQRERYG 243
>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
cytochrome P450 GI:4688670 from [Catharanthus roseus]
Length = 497
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 171 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 266
PLPF K+P +PD++ H + NS+ C+
Sbjct: 367 PLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,630,771
Number of Sequences: 28952
Number of extensions: 354808
Number of successful extensions: 1119
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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