Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_E06
(1140 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0005 + 11568545-11569119,11569179-11569191 35 0.14
07_03_1136 + 24218601-24218734,24218769-24219906 34 0.24
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 32 0.97
02_05_0686 - 30900748-30902167,30903442-30904742 32 0.97
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 30 3.0
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 30 3.9
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 5.2
02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060 29 5.2
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332... 29 5.2
06_01_1095 + 8984363-8984789,8985175-8985416,8985500-8985622,898... 29 6.8
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 29 9.0
04_03_0660 + 18463011-18463322,18463424-18463516,18464500-184646... 29 9.0
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 29 9.0
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 34.7 bits (76), Expect = 0.14
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 532 PPPPFXGGGGXXXAXXGGRVFSPPPS 609
PPPP+ GGGG + GG ++ PPP+
Sbjct: 93 PPPPYSGGGG-GSSTGGGGIYYPPPT 117
Score = 31.9 bits (69), Expect = 0.97
Identities = 20/62 (32%), Positives = 21/62 (33%), Gaps = 7/62 (11%)
Frame = -3
Query: 604 GGGRRPXXXGGXXXXPPPPQKXGGGXXFXXXXGGGGA-------PRXXXXXXXFFXKKXP 446
GGG GG PPP GGG GGGG P F+ P
Sbjct: 99 GGGGGSSTGGGGIYYPPPTGGGGGGGGGWQQGGGGGGAYPTPPPPNPFLPYFPFYYYSPP 158
Query: 445 PP 440
PP
Sbjct: 159 PP 160
Score = 30.3 bits (65), Expect = 3.0
Identities = 15/40 (37%), Positives = 16/40 (40%)
Frame = +2
Query: 530 PPPXLLXGGGGXXXPXXXXGSSPPPPXXXKKKKKKXGGXG 649
PPP GGGG +SPPPP GG G
Sbjct: 71 PPPSYPSGGGGGGGGGTVMYTSPPPPYSGGGGGSSTGGGG 110
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 33.9 bits (74), Expect = 0.24
Identities = 20/43 (46%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Frame = -3
Query: 604 GGGRRPXXXGGXXXXPP-PPQKXGGG---XXFXXXXGGGGAPR 488
GGG RP GG P PP GGG GGGGAPR
Sbjct: 103 GGGARPPGGGGGGGPPSLPPGAGGGGGARPPAPGGGGGGGAPR 145
Score = 29.9 bits (64), Expect = 3.9
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = -3
Query: 604 GGGRRPXXXGGXXXXPPPPQKXGGGXXFXXXXGGGGAPR 488
GGG P GG PP GG GGGG R
Sbjct: 93 GGGGAPGPLGGGGARPPGGGGGGGPPSLPPGAGGGGGAR 131
Score = 29.1 bits (62), Expect = 6.8
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = -3
Query: 604 GGGRRPXXXGGXXXXPPPPQKXGGGXXFXXXXGGGGAP 491
G GR P GG P GGG G GGAP
Sbjct: 181 GPGRAPGGGGGGGGPGRAPGGGGGGGGLGGGGGEGGAP 218
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 31.9 bits (69), Expect = 0.97
Identities = 15/40 (37%), Positives = 16/40 (40%)
Frame = +3
Query: 489 RGAPPPPXXXKKXXPPPXFXGGGGXXXXPPXXXGLLPPPL 608
RG PPP PPP G G PP G PP+
Sbjct: 1170 RGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPGAPAPPM 1209
Score = 30.7 bits (66), Expect = 2.2
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +3
Query: 495 APPPPXXXKKXXPPPXFXGGGGXXXXPPXXXG 590
APPPP + PPP GG PP G
Sbjct: 1162 APPPPAGFRGGTPPPNAHGGVAPPPPPPRGHG 1193
Score = 30.3 bits (65), Expect = 3.0
Identities = 19/55 (34%), Positives = 19/55 (34%)
Frame = -1
Query: 600 GGEDPXXXXGXXXPPPPXKRXGGGXXFXXXGXGXXPPGXXDXXXXFFXKKXPPPP 436
GG P G PPPP R GG G PPG PPPP
Sbjct: 1171 GGTPPPNAHGGVAPPPPPPRGHGG-----VGGPPTPPGAPAPPMPPGVPGGPPPP 1220
Score = 29.1 bits (62), Expect = 6.8
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +3
Query: 495 APPPPXXXKKXXPPPXFXGGGGXXXXPPXXXGL 593
APPPP PPP GG PP GL
Sbjct: 1098 APPPPSIGAGAPPPPPPPGGITGVPPPPPIGGL 1130
Score = 28.7 bits (61), Expect = 9.0
Identities = 17/41 (41%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Frame = +3
Query: 498 PPPPXXXKKXXPPPXFXGG-GGXXXXP----PXXXGLLPPP 605
PPPP PPP GG GG P P G +PPP
Sbjct: 1111 PPPPPGGITGVPPPPPIGGLGGHQAPPAPPLPEGIGGVPPP 1151
Score = 28.7 bits (61), Expect = 9.0
Identities = 16/39 (41%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Frame = +3
Query: 495 APPPPXXXKKXXPPPXFXGGGGXXXXPP--XXXGLLPPP 605
APP P PPP G GG PP G PPP
Sbjct: 1138 APPLPEGIGGVPPPPPVGGLGGPPAPPPPAGFRGGTPPP 1176
Score = 28.7 bits (61), Expect = 9.0
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3
Query: 607 RGGGRRPXXXGGXXXXPPPPQKXGG 533
RGG P GG PPPP+ GG
Sbjct: 1170 RGGTPPPNAHGGVAPPPPPPRGHGG 1194
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 31.9 bits (69), Expect = 0.97
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Frame = +3
Query: 489 RGAPPPPXXXKKXXPPPXFXGGG-GXXXXPPXXXGLLPPP 605
+G PPPP PPP GG G PP G PP
Sbjct: 351 KGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGGASRPP 390
Score = 29.9 bits (64), Expect = 3.9
Identities = 16/37 (43%), Positives = 16/37 (43%)
Frame = +3
Query: 495 APPPPXXXKKXXPPPXFXGGGGXXXXPPXXXGLLPPP 605
APPPP K PPP G PP G PPP
Sbjct: 325 APPPPPPPKAAPPPPPPKG----PPPPPPAKGPPPPP 357
Score = 29.1 bits (62), Expect = 6.8
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +1
Query: 487 PGGXXPXPXXXKXXXPPPPFXGGGGXXXAXXGGRVFSPPP 606
P P P K PPPP G GG+ PPP
Sbjct: 340 PPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPP 379
Score = 28.7 bits (61), Expect = 9.0
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = +2
Query: 488 PGGXXPXPXXXKXXPPPXLLXGGGGXXXPXXXXGSSPPPPXXXKKKK 628
P P P K PPP G P G SPPPP KK
Sbjct: 331 PPKAAPPPPPPKGPPPP---PPAKGPPPPPPPKGPSPPPPPPPGGKK 374
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 30.3 bits (65), Expect = 3.0
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +3
Query: 498 PPPPXXXKKXXPPPXFXGGGGXXXXPPXXXGLLP 599
PPPP PPP G G PP G LP
Sbjct: 614 PPPPPRPPGAPPPPPPPGKPGGPPPPPPRPGSLP 647
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 29.9 bits (64), Expect = 3.9
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 498 PPPPXXXKKXXPPPXFXGGGG 560
PPPP + PPP GGGG
Sbjct: 8 PPPPPPPPQHPPPPQAGGGGG 28
Score = 28.7 bits (61), Expect = 9.0
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = -2
Query: 584 PPXXAXXXPPPPXKGGGGXXFFXXXGXGXXPP 489
PP PPPP GGGG F G PP
Sbjct: 10 PPPPPPQHPPPPQAGGGGGGEF-YRGPPPQPP 40
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.5 bits (63), Expect = 5.2
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +3
Query: 498 PPPPXXXKKXXPPPXFXGGGGXXXXPPXXXGLLPPP 605
PPPP + PPP G G PP PPP
Sbjct: 640 PPPPSLPNRLVPPPPAPGIGNKFPAPPPPP---PPP 672
>02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060
Length = 794
Score = 29.5 bits (63), Expect = 5.2
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +1
Query: 532 PPPPFX-GGGGXXXAXXGGRVFSPPP 606
PPPPF GGGG ++++PPP
Sbjct: 15 PPPPFGRGGGGAGYPRGHKQLYAPPP 40
>01_01_0446 +
3321832-3322232,3322398-3322455,3322810-3323748,
3324504-3324654,3324740-3324818,3325826-3325934
Length = 578
Score = 29.5 bits (63), Expect = 5.2
Identities = 16/36 (44%), Positives = 16/36 (44%)
Frame = -3
Query: 604 GGGRRPXXXGGXXXXPPPPQKXGGGXXFXXXXGGGG 497
G G RP GG PPP GGG GGGG
Sbjct: 381 GYGGRPMPGGGGPGAPPPYHGGGGGG--GGGGGGGG 414
>06_01_1095 +
8984363-8984789,8985175-8985416,8985500-8985622,
8985783-8985899,8986258-8986399,8986587-8986627,
8987194-8987453,8987505-8987607,8987698-8987776,
8987856-8988115
Length = 597
Score = 29.1 bits (62), Expect = 6.8
Identities = 16/44 (36%), Positives = 17/44 (38%)
Frame = +2
Query: 503 PXPXXXKXXPPPXLLXGGGGXXXPXXXXGSSPPPPXXXKKKKKK 634
P P + P G P SPPPP KKKKKK
Sbjct: 35 PSPTRRRRLLAPLAAASNSGS--PSKDSNRSPPPPSKKKKKKKK 76
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 28.7 bits (61), Expect = 9.0
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +3
Query: 498 PPPPXXXKKXXPPPXFXGGGGXXXXPPXXXGLLPPP 605
PPPP + PPP G PP PPP
Sbjct: 83 PPPPQMYYQPPPPPPPYGVNSSQPPPPPPPPPSPPP 118
>04_03_0660 +
18463011-18463322,18463424-18463516,18464500-18464607,
18464892-18465044,18465256-18465354,18465443-18465571,
18465987-18466166,18466208-18466246,18466247-18466363,
18466445-18466609
Length = 464
Score = 28.7 bits (61), Expect = 9.0
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +3
Query: 498 PPPPXXXKKXXPPPXFXGGGG 560
PPPP PPP GGGG
Sbjct: 56 PPPPTQPAPPPPPPARSGGGG 76
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 28.7 bits (61), Expect = 9.0
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +3
Query: 495 APPPPXXXKKXXPPPXFXGGGGXXXXPPXXXG 590
AP PP PPP G GG PP G
Sbjct: 360 APRPPGPGPGPPPPPGAAGRGGGGPPPPALPG 391
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,895,656
Number of Sequences: 37544
Number of extensions: 617633
Number of successful extensions: 2678
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2226
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3456450016
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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