Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_E06
(1140 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 36 0.080
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.24
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.43
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.99
SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30) 31 1.3
SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08) 31 1.7
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1) 31 1.7
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.0
SB_31227| Best HMM Match : RIO1 (HMM E-Value=0.13) 29 7.0
SB_812| Best HMM Match : FH2 (HMM E-Value=0) 29 7.0
SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.2
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 29 9.2
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.2
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 29 9.2
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 35.5 bits (78), Expect = 0.080
Identities = 16/39 (41%), Positives = 16/39 (41%)
Frame = +3
Query: 489 RGAPPPPXXXKKXXPPPXFXGGGGXXXXPPXXXGLLPPP 605
RGAPPPP PPP G PP PPP
Sbjct: 302 RGAPPPPPSRGSAPPPPPARMGTAPPPPPPSRSSQRPPP 340
Score = 28.7 bits (61), Expect = 9.2
Identities = 13/39 (33%), Positives = 15/39 (38%)
Frame = +3
Query: 489 RGAPPPPXXXKKXXPPPXFXGGGGXXXXPPXXXGLLPPP 605
RG+ PPP + PP PP G PPP
Sbjct: 311 RGSAPPPPPARMGTAPPPPPPSRSSQRPPPPSRGAPPPP 349
>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 33.9 bits (74), Expect = 0.24
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +3
Query: 489 RGAPPPPXXXKKXXPPPXFXGGGGXXXXPPXXXGLLPPP 605
+G PPPP ++ PPP GGG LPPP
Sbjct: 576 QGGPPPPGAGQEGPPPPGAGQGGGPPPPGAGQGWGLPPP 614
Score = 32.3 bits (70), Expect = 0.75
Identities = 15/38 (39%), Positives = 16/38 (42%)
Frame = +3
Query: 492 GAPPPPXXXKKXXPPPXFXGGGGXXXXPPXXXGLLPPP 605
G PPPP + PP G GG P G PPP
Sbjct: 545 GGPPPPGAGQGWGQPPPGAGQGGGPPPPGAGQGGPPPP 582
Score = 31.9 bits (69), Expect = 0.99
Identities = 15/38 (39%), Positives = 16/38 (42%)
Frame = +3
Query: 492 GAPPPPXXXKKXXPPPXFXGGGGXXXXPPXXXGLLPPP 605
G PPPP + PPP G G P G PPP
Sbjct: 501 GGPPPPGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPP 538
Score = 31.9 bits (69), Expect = 0.99
Identities = 15/38 (39%), Positives = 16/38 (42%)
Frame = +3
Query: 492 GAPPPPXXXKKXXPPPXFXGGGGXXXXPPXXXGLLPPP 605
G PPPP + PP G GG P G PPP
Sbjct: 512 GGPPPPGAGQGWGQPPPGAGQGGGPPPPGAGQGGGPPP 549
Score = 31.9 bits (69), Expect = 0.99
Identities = 15/38 (39%), Positives = 16/38 (42%)
Frame = +3
Query: 492 GAPPPPXXXKKXXPPPXFXGGGGXXXXPPXXXGLLPPP 605
G PPPP + PPP G G P G PPP
Sbjct: 534 GGPPPPGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPP 571
Score = 31.5 bits (68), Expect = 1.3
Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Frame = +1
Query: 490 GGXXPXPXXXKXXXPPPPFXGGGGXXXAXXGGRVFSPPPSXXXKKKKKXG-GXGXXP 657
GG P P + PPP G GG G+ PPP + G G G P
Sbjct: 544 GGGPPPPGAGQGWGQPPPGAGQGGGPPPPGAGQGGPPPPGAGQEGPPPPGAGQGGGP 600
Score = 31.1 bits (67), Expect = 1.7
Identities = 20/66 (30%), Positives = 22/66 (33%), Gaps = 4/66 (6%)
Frame = -1
Query: 603 GGGEDPXXXXGXXXPPPPXKRXGGGXXFXXXGXGXXPP----GXXDXXXXFFXKKXPPPP 436
GGG P PPPP G G G G PP G ++ PPPP
Sbjct: 533 GGGPPPPGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPPPGAGQGGPPPPGAGQEGPPPP 592
Query: 435 XXXAXG 418
G
Sbjct: 593 GAGQGG 598
Score = 30.7 bits (66), Expect = 2.3
Identities = 20/70 (28%), Positives = 24/70 (34%)
Frame = +2
Query: 398 PXKKKKKPXAXXXGGGGXFFXKKXXXXSXXPGGXXPXPXXXKXXPPPXLLXGGGGXXXPX 577
P K+ K GGG + + + GG P PPP G G P
Sbjct: 472 PAKQIMKQMGKVPGGGQGW--GQPPPGAGQGGGPPPPGAGQGGGPPPPGAGQGWGQPPPG 529
Query: 578 XXXGSSPPPP 607
G PPPP
Sbjct: 530 AGQGGGPPPP 539
Score = 30.7 bits (66), Expect = 2.3
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = +1
Query: 490 GGXXPXPXXXKXXXPPPPFXGGGGXXXAXXGGRVFSPPP 606
GG P P + PPPP G G G+ PPP
Sbjct: 500 GGGPPPPGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPP 538
Score = 30.7 bits (66), Expect = 2.3
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = +1
Query: 490 GGXXPXPXXXKXXXPPPPFXGGGGXXXAXXGGRVFSPPP 606
GG P P + PPP G GG G+ PPP
Sbjct: 511 GGGPPPPGAGQGWGQPPPGAGQGGGPPPPGAGQGGGPPP 549
Score = 30.7 bits (66), Expect = 2.3
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = +1
Query: 490 GGXXPXPXXXKXXXPPPPFXGGGGXXXAXXGGRVFSPPP 606
GG P P + PPPP G G G+ PPP
Sbjct: 533 GGGPPPPGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPP 571
Score = 30.3 bits (65), Expect = 3.0
Identities = 15/39 (38%), Positives = 16/39 (41%)
Frame = +2
Query: 491 GGXXPXPXXXKXXPPPXLLXGGGGXXXPXXXXGSSPPPP 607
GG P P + PPP G G P G PPPP
Sbjct: 566 GGGPPPPGAGQGGPPPPGA-GQEGPPPPGAGQGGGPPPP 603
Score = 29.9 bits (64), Expect = 4.0
Identities = 15/39 (38%), Positives = 16/39 (41%)
Frame = -3
Query: 607 RGGGRRPXXXGGXXXXPPPPQKXGGGXXFXXXXGGGGAP 491
+GGG P G PPP GGG GGG P
Sbjct: 510 QGGGPPPPGAGQGWGQPPPGAGQGGGPPPPGAGQGGGPP 548
Score = 29.9 bits (64), Expect = 4.0
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +2
Query: 494 GXXPXPXXXKXXPPPXLLXGGGGXXXPXXXXGSSPPPP 607
G P P + PPP GGG P G PPP
Sbjct: 577 GGPPPPGAGQEGPPPPGAGQGGGPPPPGAGQGWGLPPP 614
Score = 29.1 bits (62), Expect = 7.0
Identities = 13/39 (33%), Positives = 16/39 (41%)
Frame = +1
Query: 490 GGXXPXPXXXKXXXPPPPFXGGGGXXXAXXGGRVFSPPP 606
G P P + PPPP G GG G+ + PP
Sbjct: 522 GWGQPPPGAGQGGGPPPPGAGQGGGPPPPGAGQGWGQPP 560
Score = 29.1 bits (62), Expect = 7.0
Identities = 16/41 (39%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Frame = -1
Query: 603 GGGEDPXXXXGXXXPPPPXKRXGGG--XXFXXXGXGXXPPG 487
G G P G PPPP GGG G G PPG
Sbjct: 575 GQGGPPPPGAGQEGPPPPGAGQGGGPPPPGAGQGWGLPPPG 615
Score = 28.7 bits (61), Expect = 9.2
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = -1
Query: 603 GGGEDPXXXXGXXXPPPPXKRXGGGXXFXXXGXGXXPP 490
GGG P PPPP G G G G PP
Sbjct: 500 GGGPPPPGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPP 537
Score = 28.7 bits (61), Expect = 9.2
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = -1
Query: 603 GGGEDPXXXXGXXXPPPPXKRXGGGXXFXXXGXGXXPP 490
GGG P PPP GGG G G PP
Sbjct: 511 GGGPPPPGAGQGWGQPPPGAGQGGGPPPPGAGQGGGPP 548
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 33.1 bits (72), Expect = 0.43
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +2
Query: 488 PGGXXPXPXXXK--XXPPPXLLXGGGGXXXPXXXXGSSPPPP 607
PGG P P PPP GGG P GS+PPPP
Sbjct: 948 PGGNAPPPPPPPGGSAPPP----GGGAPPLPPPPGGSAPPPP 985
Score = 31.9 bits (69), Expect = 0.99
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +3
Query: 498 PPPPXXXKKXXPPPXFXGGGGXXXXPPXXXGLLPPP 605
PPPP PPP GG PP G PPP
Sbjct: 922 PPPPPGGNAPLPPPP--PGGSAPSQPPPPGGNAPPP 955
Score = 30.3 bits (65), Expect = 3.0
Identities = 18/60 (30%), Positives = 18/60 (30%)
Frame = -3
Query: 604 GGGRRPXXXGGXXXXPPPPQKXGGGXXFXXXXGGGGAPRXXXXXXXFFXKKXPPPPXXXG 425
GG P PPPP GG GG AP PPPP G
Sbjct: 905 GGSESPSASPPGGSVPPPPPPPGGNAPLPPPPPGGSAPSQPPPPG---GNAPPPPPPPGG 961
Score = 29.5 bits (63), Expect = 5.3
Identities = 18/60 (30%), Positives = 18/60 (30%), Gaps = 3/60 (5%)
Frame = +1
Query: 487 PGGXXPXPXXX---KXXXPPPPFXGGGGXXXAXXGGRVFSPPPSXXXKKKKKXGGXGXXP 657
PGG P P PPPP G GG PPP GG P
Sbjct: 915 PGGSVPPPPPPPGGNAPLPPPPPGGSAPSQPPPPGGNAPPPPPPPGGSAPPPGGGAPPLP 974
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 31.9 bits (69), Expect = 0.99
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Frame = +3
Query: 489 RGAPPPPXXX---KKXXPPPXFXGGGGXXXXPPXXXGLLPPP 605
RG PPPP + PPP F PP G+ PPP
Sbjct: 466 RGMPPPPMGMYPPPRGFPPPPFGPPPPFYRGPPPPRGMPPPP 507
>SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)
Length = 739
Score = 31.5 bits (68), Expect = 1.3
Identities = 17/38 (44%), Positives = 17/38 (44%)
Frame = +3
Query: 492 GAPPPPXXXKKXXPPPXFXGGGGXXXXPPXXXGLLPPP 605
G PPPP PPP F GG PP G PPP
Sbjct: 193 GMPPPPPPP----PPPGFPGGA--PPPPPPPFGAPPPP 224
>SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08)
Length = 1052
Score = 31.1 bits (67), Expect = 1.7
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 487 PGGXXPXPXXXKXXXPPPPFXGGG 558
PGG P P + PPPP GGG
Sbjct: 202 PGGIPPPPPPIRGGVPPPPPMGGG 225
Score = 29.1 bits (62), Expect = 7.0
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +3
Query: 531 PPPXFXGGGGXXXXPPXXXGLLPPP 605
PPP G GG PP G +PPP
Sbjct: 195 PPPPPPGPGGIPPPPPPIRGGVPPP 219
>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
Length = 768
Score = 31.1 bits (67), Expect = 1.7
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +2
Query: 530 PPPXLLXGGGGXXXPXXXXGSSPPPP 607
PPP L GG P G +PPPP
Sbjct: 678 PPPPPLPGGAAPPPPPPIGGGAPPPP 703
Score = 30.7 bits (66), Expect = 2.3
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +3
Query: 498 PPPPXXXKKXXPPPXFXGGGGXXXXPPXXXG 590
PPPP PPP GGG PP G
Sbjct: 679 PPPPLPGGAAPPPPPPIGGGAPPPPPPGFGG 709
Score = 29.1 bits (62), Expect = 7.0
Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Frame = +3
Query: 498 PPPPXXXK--KXXPPPXFXGGGGXXXXPPXXXGLLPPP 605
PPPP PPP GG PP G PPP
Sbjct: 665 PPPPGGQAGGAPPPPPPPLPGGAAPPPPPPIGGGAPPP 702
Score = 29.1 bits (62), Expect = 7.0
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = -2
Query: 605 GGGEKTRPPXXAXXXPPPPXKGGGGXXFFXXXGXGXXPPG 486
GG PP PPPP G GG G PG
Sbjct: 685 GGAAPPPPPPIGGGAPPPPPPGFGGFANLVKPRKGVIKPG 724
Score = 28.7 bits (61), Expect = 9.2
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +3
Query: 498 PPPPXXXKKXXPPPXFXGGGGXXXXPPXXXG 590
PPPP PPP GGG PP G
Sbjct: 678 PPPPPLPGGAAPPPPPPIGGGAPPPPPPGFG 708
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 30.3 bits (65), Expect = 3.0
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +3
Query: 498 PPPPXXXKKXXPPPXFXGGGGXXXXPPXXXGLLPPP 605
PPPP K PPP G PP G PPP
Sbjct: 365 PPPPPPTNKPPPPP--PPTNGPPPPPPPTNGPPPPP 398
>SB_31227| Best HMM Match : RIO1 (HMM E-Value=0.13)
Length = 633
Score = 29.1 bits (62), Expect = 7.0
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = -2
Query: 584 PPXXAXXXPPPPXKGGGGXXFFXXXGXGXXPP 489
PP PPPP GGG + G PP
Sbjct: 256 PPKQGLLSPPPPAYGGGPPAYGGAPNYGGAPP 287
>SB_812| Best HMM Match : FH2 (HMM E-Value=0)
Length = 1430
Score = 29.1 bits (62), Expect = 7.0
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -3
Query: 601 GGRRPXXXGGXXXXPPPPQKXGGG 530
GG P GG PPPP GGG
Sbjct: 650 GGIPPPPPGGGMFPPPPPPPPGGG 673
>SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1414
Score = 28.7 bits (61), Expect = 9.2
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +2
Query: 572 PXXXXGSSPPPPXXXKKKKKKXGGXG 649
P S PPP KKKKKK G G
Sbjct: 188 PPASTSPSAPPPAATKKKKKKREGDG 213
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 28.7 bits (61), Expect = 9.2
Identities = 15/41 (36%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Frame = +3
Query: 492 GAPPPPXXXKKXXPPPXFXGGGGXXXXP---PXXXGLLPPP 605
G PPPP PPP G P P L PPP
Sbjct: 193 GPPPPPHSRHGSAPPPPERSSGPPPPPPGRGPSQRSLAPPP 233
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 28.7 bits (61), Expect = 9.2
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = -2
Query: 602 GGEKTRPPXXAXXXPPPPXKGGGGXXFFXXXGXGXXPPG 486
GG + PP A P +G GG F G G PG
Sbjct: 506 GGSRGGPPRGAPRGRSGPPRGRGGGDFGGRGGRGGTTPG 544
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 28.7 bits (61), Expect = 9.2
Identities = 15/41 (36%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Frame = +3
Query: 492 GAPPPPXXXKKXXPPPXFXGGGGXXXXP---PXXXGLLPPP 605
G PPPP PPP G P P L PPP
Sbjct: 105 GPPPPPHSRHGSAPPPPERSSGPPPPPPGRGPSQRSLAPPP 145
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,867,813
Number of Sequences: 59808
Number of extensions: 354565
Number of successful extensions: 1163
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 16,821,457
effective HSP length: 83
effective length of database: 11,857,393
effective search space used: 3509788328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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