Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_E06
(1140 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid t... 38 0.016
At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family... 33 0.46
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family... 31 1.9
At3g15000.1 68416.m01897 expressed protein similar to DAG protei... 31 1.9
At1g61080.1 68414.m06877 proline-rich family protein 30 3.3
At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa... 29 5.7
At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa... 29 5.7
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro... 29 5.7
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 28 10.0
>At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to auxin
down regulated GB:X69640 GI:296442 from [Glycine max];
contains Pfam profile PF00234: Protease inhibitor/seed
storage/LTP family
Length = 297
Score = 37.5 bits (83), Expect = 0.016
Identities = 21/57 (36%), Positives = 23/57 (40%)
Frame = +3
Query: 438 GGGGXFXXKXXXXXXXXRGAPPPPXXXKKXXPPPXFXGGGGXXXXPPXXXGLLPPPL 608
GGGG K G PPP K PP GGGG PP + PPP+
Sbjct: 44 GGGGGGGSKPPPHHGGKGGGKPPPHGGKGGGPPHHGGGGGGGGKSPPV---VRPPPV 97
Score = 30.3 bits (65), Expect = 2.5
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = -3
Query: 604 GGGRRPXXXGGXXXXPPPPQKXGGGXXFXXXXGGGG 497
GG + P GG PPP GG GGGG
Sbjct: 49 GGSKPPPHHGGKGGGKPPPHGGKGGGPPHHGGGGGG 84
>At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 162
Score = 32.7 bits (71), Expect = 0.46
Identities = 18/62 (29%), Positives = 24/62 (38%)
Frame = -3
Query: 589 PXXXGGXXXXPPPPQKXGGGXXFXXXXGGGGAPRXXXXXXXFFXKKXPPPPXXXGXGFFF 410
P GG PPP + GGG + GGGG + + PPP +F
Sbjct: 72 PSSGGGSSYYYPPPSQSGGGSKYPPPYGGGG--QGYYYPPPYSGNYPTPPPPNPIVPYFP 129
Query: 409 FF 404
F+
Sbjct: 130 FY 131
Score = 28.7 bits (61), Expect = 7.5
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +3
Query: 498 PPPPXXXKKXXPPPXFXGGGGXXXXPPXXXGLLPPP 605
PPP PP + GGG PP G P P
Sbjct: 83 PPPSQSGGGSKYPPPYGGGGQGYYYPPPYSGNYPTP 118
>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At4g04980,
At5g61090 [Arabidopsis thaliana]; identical to cDNA
CHUP1 for actin binding protein GI:28071264
Length = 1004
Score = 30.7 bits (66), Expect = 1.9
Identities = 18/44 (40%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Frame = -2
Query: 605 GGGEKT-----RPPXXAXXXPPPPXKGGGGXXFFXXXGXGXXPP 489
GGG+ T RPP PPPP GGG G G PP
Sbjct: 660 GGGKSTNLPSARPPLPGGGPPPPPPPPGGGPP--PPPGGGPPPP 701
Score = 29.5 bits (63), Expect = 4.3
Identities = 16/50 (32%), Positives = 16/50 (32%)
Frame = +3
Query: 441 GGGXFXXKXXXXXXXXRGAPPPPXXXKKXXPPPXFXGGGGXXXXPPXXXG 590
GGG G PPPP PPP GG PP G
Sbjct: 660 GGGKSTNLPSARPPLPGGGPPPPPPPPGGGPPPPPGGGPPPPPPPPGALG 709
Score = 28.3 bits (60), Expect = 10.0
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -3
Query: 604 GGGRRPXXXGGXXXXPPPPQKXGGG 530
GGG P GG PPPP G G
Sbjct: 687 GGGPPPPPGGGPPPPPPPPGALGRG 711
>At3g15000.1 68416.m01897 expressed protein similar to DAG protein
(required for chloroplast differentiation and palisade
development) GB:Q38732 [Antirrhinum majus]
Length = 395
Score = 30.7 bits (66), Expect = 1.9
Identities = 14/41 (34%), Positives = 15/41 (36%)
Frame = +1
Query: 487 PGGXXPXPXXXKXXXPPPPFXGGGGXXXAXXGGRVFSPPPS 609
P G P P PPPP GG G PPP+
Sbjct: 247 PMGGPPPPPHIGGSAPPPPHMGGSAPPPPHMGQNYGPPPPN 287
Score = 29.9 bits (64), Expect = 3.3
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = +2
Query: 491 GGXXPXPXXXKXXPPPXLLXGGGGXXXPXXXXGSSPPPP 607
GG P PPP + GG P GS+PPPP
Sbjct: 239 GGPPPQRPPMGGPPPPPHI--GGSAPPPPHMGGSAPPPP 275
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 29.9 bits (64), Expect = 3.3
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +3
Query: 498 PPPPXXXKKXXPPPXFXGGGGXXXXPPXXXGLLPPPL 608
PPPP + PPP G G PP PPP+
Sbjct: 566 PPPPMQNRAPSPPPMPMGNSGSGGPPPP-----PPPM 597
>At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 29.1 bits (62), Expect = 5.7
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +3
Query: 495 APPPPXXXKKXXPPPXFXGGGGXXXX-PPXXXGLLPPP 605
APP + PPP F G G PP G+ PPP
Sbjct: 155 APPIIRPPGQMLPPPPFGGQGPPMGRGPPPPYGMRPPP 192
>At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 29.1 bits (62), Expect = 5.7
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +3
Query: 495 APPPPXXXKKXXPPPXFXGGGGXXXX-PPXXXGLLPPP 605
APP + PPP F G G PP G+ PPP
Sbjct: 155 APPIIRPPGQMLPPPPFGGQGPPMGRGPPPPYGMRPPP 192
>At1g31810.1 68414.m03904 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|P48608 Diaphanous protein {Drosophila
melanogaster}; contains Pfam profile PF02181: Formin
Homology 2(FH2) Domain
Length = 1201
Score = 29.1 bits (62), Expect = 5.7
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +3
Query: 495 APPPPXXXKKXXPPPXFXGGGGXXXXPP 578
APPPP K PPP G G PP
Sbjct: 727 APPPPPLSKTPVPPPPPGLGRGTSSGPP 754
>At1g59910.1 68414.m06749 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 929
Score = 28.3 bits (60), Expect = 10.0
Identities = 16/40 (40%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Frame = +3
Query: 495 APPPPXXXKKXX---PPPXFXGGGGXXXXPPXXXGLLPPP 605
APPPP KK PPP G G PP PP
Sbjct: 394 APPPPPPPKKGPAAPPPPPPPGKKGAGPPPPPPMSKKGPP 433
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,580,099
Number of Sequences: 28952
Number of extensions: 343976
Number of successful extensions: 1608
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 12,070,560
effective HSP length: 82
effective length of database: 9,696,496
effective search space used: 2879859312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -