Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_E04
         (803 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    35   0.087
01_01_0083 + 631196-631675                                             29   3.3  
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    29   5.7  

>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 34.7 bits (76), Expect = 0.087
 Identities = 37/148 (25%), Positives = 40/148 (27%), Gaps = 1/148 (0%)
 Frame = -1

Query: 758  PPPXXXXXXXXXXXXGG-GXXXXXPXXXXXXGXXXXXXPRGGGXPXXKXGGPPPPXXXXG 582
            PPP            GG G     P      G      P     P    GGPP P    G
Sbjct: 1113 PPPGGITGVPPPPPIGGLGGHQAPPAPPLPEGIGGVPPP----PPVGGLGGPPAPPPPAG 1168

Query: 581  GXXGXXXXXFXXXGXXGGVQPXXXFXRXXGXFXXKXGGXGXXXPXXXXXXPGXPXFXXXG 402
               G            GGV P     R  G         G   P      PG P      
Sbjct: 1169 FRGGTPPP-----NAHGGVAPPPPPPRGHGGVGGPPTPPGAPAPPMPPGVPGGP------ 1217

Query: 401  PPPXXFXGXPXPXXGKAPISPGXPXQIG 318
            PPP    G P P  G+  +  G    +G
Sbjct: 1218 PPPPGGRGLPAPPGGRGVVGHGLTRSLG 1245



 Score = 27.9 bits (59), Expect = 10.0
 Identities = 18/65 (27%), Positives = 18/65 (27%)
 Frame = +1

Query: 520  GXTPPXXPXXXXLXXXXPXXPPXXXXGGGGPPXXXXGXPPPRGXXXXXXPLXXXXXGXXX 699
            G  PP  P            PP    G G PP      PPP G      P      G   
Sbjct: 1079 GGIPPLPPPLPPTLGDYGVAPPPPSIGAGAPPP----PPPPGGITGVPPPPPIGGLGGHQ 1134

Query: 700  XXPPP 714
              P P
Sbjct: 1135 APPAP 1139



 Score = 27.9 bits (59), Expect = 10.0
 Identities = 17/54 (31%), Positives = 17/54 (31%)
 Frame = +2

Query: 482  PXTXPXPXKXPXGVXPPXLFXXXKXXGXXXPXXPPXIXGGGGAPXFXXXGPPPP 643
            P   P P     G  PP         G   P  PP   GG G P      P PP
Sbjct: 1160 PPAPPPPAGFRGGTPPPNAHG-----GVAPPPPPPRGHGGVGGPPTPPGAPAPP 1208


>01_01_0083 + 631196-631675
          Length = 159

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +2

Query: 560 GXXXPXXPPXIXGGGGAPXFXXXGPPPP 643
           G   P   P   GGGG   F    PPPP
Sbjct: 85  GGYIPYYQPPAGGGGGGGGFNYPAPPPP 112


>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/44 (36%), Positives = 16/44 (36%)
 Frame = -2

Query: 451 PGPXXPPXVXPFSXXXAPPXGVXXGXPXPXXXKPPFPRXXQXKS 320
           P P  PP   P S    PP       P      PP PR  Q KS
Sbjct: 107 PPPPPPPPSPPPSAPPPPPPPPTQPPPREAQLAPPPPREQQSKS 150


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,750,688
Number of Sequences: 37544
Number of extensions: 513172
Number of successful extensions: 1136
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)