BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BmNP01_FL5_E04 (803 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 35 0.067 SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 32 0.63 SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 32 0.63 SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1 SB_54813| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9 SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9 SB_39538| Best HMM Match : VWA (HMM E-Value=0) 30 2.5 SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 29 4.4 SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1) 29 5.8 SB_14625| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.056) 29 5.8 SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 29 5.8 SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11) 28 7.7 >SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) Length = 382 Score = 35.1 bits (77), Expect = 0.067 Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 3/57 (5%) Frame = +2 Query: 482 PXTXPXPXKXPXGVXPPXLFXXXKXXGXXX---PXXPPXIXGGGGAPXFXXXGPPPP 643 P + P P P G+ PP F G P PP + GG P PPPP Sbjct: 244 PHSMPPPGMPPPGMMPPPGFPPMGMPGMGGMPPPGMPPPMPPGGMPPNMEQPPPPPP 300 >SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) Length = 480 Score = 31.9 bits (69), Expect = 0.63 Identities = 26/98 (26%), Positives = 27/98 (27%) Frame = +3 Query: 420 GXTXGGXXGPGXXXSPXPXFXXKRAXXPXKXPXGLXPPXXSXXXKXXXXXPXXXPXXXXG 599 G T GG P P P KR P PP S + P P Sbjct: 256 GPTSGGEPPPPKNAPPPP----KRGSSNPPPPPTRGPPSNSFTTQG----PPLPPSRDQA 307 Query: 600 GGGPPXFXXXXPPPPGXXXXXXXXXXXXXGXXXXPPPP 713 PP PPPP G PPPP Sbjct: 308 PAPPPPLNATPPPPPPSRDQVPLPPPPLRGQIAPPPPP 345 >SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) Length = 392 Score = 31.9 bits (69), Expect = 0.63 Identities = 26/98 (26%), Positives = 27/98 (27%) Frame = +3 Query: 420 GXTXGGXXGPGXXXSPXPXFXXKRAXXPXKXPXGLXPPXXSXXXKXXXXXPXXXPXXXXG 599 G T GG P P P KR P PP S + P P Sbjct: 168 GPTSGGEPPPPKNAPPPP----KRGSSNPPPPPTRGPPSNSFTTQG----PPLPPSRDQA 219 Query: 600 GGGPPXFXXXXPPPPGXXXXXXXXXXXXXGXXXXPPPP 713 PP PPPP G PPPP Sbjct: 220 PAPPPPLNATPPPPPPSRDQVPLPPPPLRGQIAPPPPP 257 >SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 550 Score = 31.1 bits (67), Expect = 1.1 Identities = 15/45 (33%), Positives = 15/45 (33%) Frame = +1 Query: 580 PPXXXXGGGGPPXXXXGXPPPRGXXXXXXPLXXXXXGXXXXXPPP 714 PP GGGPP PPP G P PPP Sbjct: 441 PPHGMPQGGGPPQLPPNLPPPPGGMRGMPPPPMGMYPPPRGFPPP 485 Score = 28.3 bits (60), Expect = 7.7 Identities = 12/29 (41%), Positives = 13/29 (44%) Frame = +2 Query: 560 GXXXPXXPPXIXGGGGAPXFXXXGPPPPG 646 G P P + GGG P PPPPG Sbjct: 435 GPPQPRPPHGMPQGGGPPQLPPNLPPPPG 463 >SB_54813| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 422 Score = 30.3 bits (65), Expect = 1.9 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = -2 Query: 316 FEPESXXRFGRYSHGGIRNXXRXACXQMQ 230 ++P + RFGR+ GG+R+ R C Q Q Sbjct: 392 YQPFARGRFGRHKGGGMRHGGRCQCQQDQ 420 >SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 290 Score = 30.3 bits (65), Expect = 1.9 Identities = 12/39 (30%), Positives = 15/39 (38%) Frame = -2 Query: 457 FXPGPXXPPXVXPFSXXXAPPXGVXXGXPXPXXXKPPFP 341 + P P PP P+ PP P P PP+P Sbjct: 174 YPPPPYPPPPNPPYPPPPNPPYPPPPNAPNPPPPNPPYP 212 Score = 29.5 bits (63), Expect = 3.3 Identities = 12/37 (32%), Positives = 14/37 (37%) Frame = -2 Query: 451 PGPXXPPXVXPFSXXXAPPXGVXXGXPXPXXXKPPFP 341 P P PP + P PP P P PP+P Sbjct: 152 PNPPYPPPLYPPPPNPPPPNAPYPPPPYPPPPNPPYP 188 >SB_39538| Best HMM Match : VWA (HMM E-Value=0) Length = 3208 Score = 29.9 bits (64), Expect = 2.5 Identities = 17/46 (36%), Positives = 17/46 (36%) Frame = -1 Query: 473 GGXGXXXPXXXXXXPGXPXFXXXGPPPXXFXGXPXPXXGKAPISPG 336 GG P PG P F G F G P P G P SPG Sbjct: 1326 GGQNPGSPLNQPTFPGFPGFVPPGTSISNFPGFPSPGSG-IPGSPG 1370 >SB_59302| Best HMM Match : Collagen (HMM E-Value=0) Length = 993 Score = 29.1 bits (62), Expect = 4.4 Identities = 19/56 (33%), Positives = 21/56 (37%) Frame = +2 Query: 470 PXFXPXTXPXPXKXPXGVXPPXLFXXXKXXGXXXPXXPPXIXGGGGAPXFXXXGPP 637 P P P P P G P F + G P PP + G G P F GPP Sbjct: 30 PPPPPYEAPPPPPGPPGPDGPPGFPGPQ--GPNGPKGPPGLPGPPGPPGF--QGPP 81 >SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1) Length = 768 Score = 28.7 bits (61), Expect = 5.8 Identities = 15/44 (34%), Positives = 15/44 (34%), Gaps = 3/44 (6%) Frame = +1 Query: 520 GXTPPXXPXXXXLXXXXPXXPPXXXXGGGG---PPXXXXGXPPP 642 G PP P P PP GG PP G PPP Sbjct: 659 GPPPPPPPPPGGQAGGAPPPPPPPLPGGAAPPPPPPIGGGAPPP 702 >SB_14625| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.056) Length = 245 Score = 28.7 bits (61), Expect = 5.8 Identities = 10/16 (62%), Positives = 11/16 (68%) Frame = -1 Query: 647 PRGGGXPXXKXGGPPP 600 P GGG P + GGPPP Sbjct: 117 PMGGGYPGQQPGGPPP 132 >SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) Length = 514 Score = 28.7 bits (61), Expect = 5.8 Identities = 14/45 (31%), Positives = 14/45 (31%) Frame = +1 Query: 580 PPXXXXGGGGPPXXXXGXPPPRGXXXXXXPLXXXXXGXXXXXPPP 714 PP G PP G PPP P G PPP Sbjct: 287 PPPPPSRGAAPPPPSRGAPPPPPSRGSAPPPPPARMGTAPPPPPP 331 >SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11) Length = 1903 Score = 28.3 bits (60), Expect = 7.7 Identities = 19/62 (30%), Positives = 22/62 (35%) Frame = +2 Query: 461 FPXPXFXPXTXPXPXKXPXGVXPPXLFXXXKXXGXXXPXXPPXIXGGGGAPXFXXXGPPP 640 +P P P P P P G P L G P PP + G G P + P Sbjct: 1659 YPAPPPPPPPAPGPP-GPDG--PMGLPGPQGPDGPKGPPGPPGLPGPQGIPGYPGAPAGP 1715 Query: 641 PG 646 PG Sbjct: 1716 PG 1717 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,193,780 Number of Sequences: 59808 Number of extensions: 324092 Number of successful extensions: 669 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 233 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 512 length of database: 16,821,457 effective HSP length: 81 effective length of database: 11,977,009 effective search space used: 2227723674 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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