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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_E04
         (803 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)                       35   0.067
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)                     32   0.63 
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)              32   0.63 
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_54813| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_39538| Best HMM Match : VWA (HMM E-Value=0)                         30   2.5  
SB_59302| Best HMM Match : Collagen (HMM E-Value=0)                    29   4.4  
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)                 29   5.8  
SB_14625| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.056)          29   5.8  
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)                   29   5.8  
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)              28   7.7  

>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 382

 Score = 35.1 bits (77), Expect = 0.067
 Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
 Frame = +2

Query: 482 PXTXPXPXKXPXGVXPPXLFXXXKXXGXXX---PXXPPXIXGGGGAPXFXXXGPPPP 643
           P + P P   P G+ PP  F      G      P  PP +  GG  P      PPPP
Sbjct: 244 PHSMPPPGMPPPGMMPPPGFPPMGMPGMGGMPPPGMPPPMPPGGMPPNMEQPPPPPP 300


>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
          Length = 480

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 26/98 (26%), Positives = 27/98 (27%)
 Frame = +3

Query: 420 GXTXGGXXGPGXXXSPXPXFXXKRAXXPXKXPXGLXPPXXSXXXKXXXXXPXXXPXXXXG 599
           G T GG   P     P P    KR       P    PP  S   +     P   P     
Sbjct: 256 GPTSGGEPPPPKNAPPPP----KRGSSNPPPPPTRGPPSNSFTTQG----PPLPPSRDQA 307

Query: 600 GGGPPXFXXXXPPPPGXXXXXXXXXXXXXGXXXXPPPP 713
              PP      PPPP              G    PPPP
Sbjct: 308 PAPPPPLNATPPPPPPSRDQVPLPPPPLRGQIAPPPPP 345


>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
          Length = 392

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 26/98 (26%), Positives = 27/98 (27%)
 Frame = +3

Query: 420 GXTXGGXXGPGXXXSPXPXFXXKRAXXPXKXPXGLXPPXXSXXXKXXXXXPXXXPXXXXG 599
           G T GG   P     P P    KR       P    PP  S   +     P   P     
Sbjct: 168 GPTSGGEPPPPKNAPPPP----KRGSSNPPPPPTRGPPSNSFTTQG----PPLPPSRDQA 219

Query: 600 GGGPPXFXXXXPPPPGXXXXXXXXXXXXXGXXXXPPPP 713
              PP      PPPP              G    PPPP
Sbjct: 220 PAPPPPLNATPPPPPPSRDQVPLPPPPLRGQIAPPPPP 257


>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/45 (33%), Positives = 15/45 (33%)
 Frame = +1

Query: 580 PPXXXXGGGGPPXXXXGXPPPRGXXXXXXPLXXXXXGXXXXXPPP 714
           PP     GGGPP      PPP G      P            PPP
Sbjct: 441 PPHGMPQGGGPPQLPPNLPPPPGGMRGMPPPPMGMYPPPRGFPPP 485



 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +2

Query: 560 GXXXPXXPPXIXGGGGAPXFXXXGPPPPG 646
           G   P  P  +  GGG P      PPPPG
Sbjct: 435 GPPQPRPPHGMPQGGGPPQLPPNLPPPPG 463


>SB_54813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 422

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 316 FEPESXXRFGRYSHGGIRNXXRXACXQMQ 230
           ++P +  RFGR+  GG+R+  R  C Q Q
Sbjct: 392 YQPFARGRFGRHKGGGMRHGGRCQCQQDQ 420


>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/39 (30%), Positives = 15/39 (38%)
 Frame = -2

Query: 457 FXPGPXXPPXVXPFSXXXAPPXGVXXGXPXPXXXKPPFP 341
           + P P  PP   P+     PP       P P    PP+P
Sbjct: 174 YPPPPYPPPPNPPYPPPPNPPYPPPPNAPNPPPPNPPYP 212



 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/37 (32%), Positives = 14/37 (37%)
 Frame = -2

Query: 451 PGPXXPPXVXPFSXXXAPPXGVXXGXPXPXXXKPPFP 341
           P P  PP + P      PP       P P    PP+P
Sbjct: 152 PNPPYPPPLYPPPPNPPPPNAPYPPPPYPPPPNPPYP 188


>SB_39538| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3208

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/46 (36%), Positives = 17/46 (36%)
 Frame = -1

Query: 473  GGXGXXXPXXXXXXPGXPXFXXXGPPPXXFXGXPXPXXGKAPISPG 336
            GG     P      PG P F   G     F G P P  G  P SPG
Sbjct: 1326 GGQNPGSPLNQPTFPGFPGFVPPGTSISNFPGFPSPGSG-IPGSPG 1370


>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 993

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/56 (33%), Positives = 21/56 (37%)
 Frame = +2

Query: 470 PXFXPXTXPXPXKXPXGVXPPXLFXXXKXXGXXXPXXPPXIXGGGGAPXFXXXGPP 637
           P   P   P P   P G   P  F   +  G   P  PP + G  G P F   GPP
Sbjct: 30  PPPPPYEAPPPPPGPPGPDGPPGFPGPQ--GPNGPKGPPGLPGPPGPPGF--QGPP 81


>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
          Length = 768

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/44 (34%), Positives = 15/44 (34%), Gaps = 3/44 (6%)
 Frame = +1

Query: 520 GXTPPXXPXXXXLXXXXPXXPPXXXXGGGG---PPXXXXGXPPP 642
           G  PP  P         P  PP    GG     PP    G PPP
Sbjct: 659 GPPPPPPPPPGGQAGGAPPPPPPPLPGGAAPPPPPPIGGGAPPP 702


>SB_14625| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.056)
          Length = 245

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 647 PRGGGXPXXKXGGPPP 600
           P GGG P  + GGPPP
Sbjct: 117 PMGGGYPGQQPGGPPP 132


>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
          Length = 514

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/45 (31%), Positives = 14/45 (31%)
 Frame = +1

Query: 580 PPXXXXGGGGPPXXXXGXPPPRGXXXXXXPLXXXXXGXXXXXPPP 714
           PP     G  PP    G PPP        P      G     PPP
Sbjct: 287 PPPPPSRGAAPPPPSRGAPPPPPSRGSAPPPPPARMGTAPPPPPP 331


>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
          Length = 1903

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 19/62 (30%), Positives = 22/62 (35%)
 Frame = +2

Query: 461  FPXPXFXPXTXPXPXKXPXGVXPPXLFXXXKXXGXXXPXXPPXIXGGGGAPXFXXXGPPP 640
            +P P   P   P P   P G  P  L       G   P  PP + G  G P +      P
Sbjct: 1659 YPAPPPPPPPAPGPP-GPDG--PMGLPGPQGPDGPKGPPGPPGLPGPQGIPGYPGAPAGP 1715

Query: 641  PG 646
            PG
Sbjct: 1716 PG 1717


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,193,780
Number of Sequences: 59808
Number of extensions: 324092
Number of successful extensions: 669
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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