Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_E04
         (803 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g03120.1 68417.m00425 proline-rich family protein similar to ...    32   0.51 
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family...    31   0.90 
At2g04170.1 68415.m00402 meprin and TRAF homology domain-contain...    30   2.1  
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro...    30   2.1  
At1g15830.1 68414.m01900 expressed protein                             29   3.6  
At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa...    29   4.8  
At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa...    29   4.8  
At3g49840.1 68416.m05449 proline-rich family protein contains pr...    29   4.8  

>At4g03120.1 68417.m00425 proline-rich family protein similar to U1
           small nuclear ribonucleoprotein C; contains proline rich
           extensin domains, INTERPRO:IPR002965
          Length = 207

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 14/41 (34%), Positives = 16/41 (39%)
 Frame = +3

Query: 522 LXPPXXSXXXKXXXXXPXXXPXXXXGGGGPPXFXXXXPPPP 644
           L PP  +         P   P    GGG PP +    PPPP
Sbjct: 135 LRPPGMAPIPGQGGGPPGMAPIPGQGGGPPPNYNGLPPPPP 175



 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/54 (29%), Positives = 17/54 (31%)
 Frame = +2

Query: 482 PXTXPXPXKXPXGVXPPXLFXXXKXXGXXXPXXPPXIXGGGGAPXFXXXGPPPP 643
           P   P P     G+  P         G   P   P    GGG P      PPPP
Sbjct: 121 PPGAPLPPPPQNGILRPPGMAPIPGQGGGPPGMAPIPGQGGGPPPNYNGLPPPP 174


>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
           protein Common family members: At4g18570, At4g04980,
           At5g61090 [Arabidopsis thaliana];  identical to cDNA
           CHUP1 for actin binding protein GI:28071264
          Length = 1004

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -1

Query: 647 PRGGGXPXXKXGGPPPPXXXXG 582
           P GGG P    GGPPPP    G
Sbjct: 685 PPGGGPPPPPGGGPPPPPPPPG 706



 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 580 PPXXXXGGGGPPXXXXGXPPP 642
           PP     GGGPP    G PPP
Sbjct: 680 PPPPPPPGGGPPPPPGGGPPP 700



 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 580 PPXXXXGGGGPPXXXXGXPPP 642
           PP    GGG PP    G PPP
Sbjct: 681 PPPPPPGGGPPPPPGGGPPPP 701


>At2g04170.1 68415.m00402 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to  NtN2 [Medicago truncatula] GI:3776084; contains Pfam
           profile PF00917: MATH domain
          Length = 420

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 24/84 (28%), Positives = 24/84 (28%), Gaps = 1/84 (1%)
 Frame = -1

Query: 584 GGXXGXXXXXFXXXGXXGGVQPXXX-FXRXXGXFXXKXGGXGXXXPXXXXXXPGXPXFXX 408
           GG  G     F   G   G  P    F      F     G G   P      P  P F  
Sbjct: 7   GGGPGRGGRGFGGRGGGPGFGPGGPGFGPGGPGFGPGGPGFGPGGPGFGGRGPRGPGFGP 66

Query: 407 XGPPPXXFXGXPXPXXGKAPISPG 336
            GP P      P P  G  P  PG
Sbjct: 67  RGPGPWSGPRGPRPGGGGGP-GPG 89


>At1g59910.1 68414.m06749 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02128
          Length = 929

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/56 (33%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
 Frame = +2

Query: 488 TXPXPXKXPXGVXPPXLFXXXKXXGXXXPXXPPXIXGGG--GAPXFXXXGPP-PPG 646
           T P P   P    PP      K      P  PP   G G    P     GPP PPG
Sbjct: 382 TSPPPPPPPSAAAPPPPPPPKKGPAAPPPPPPPGKKGAGPPPPPPMSKKGPPKPPG 437


>At1g15830.1 68414.m01900 expressed protein
          Length = 483

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = +2

Query: 572 PXXPPXIXGGGGAPXFXXXGPPPP 643
           P  PP I GGGG P     G PPP
Sbjct: 120 PGAPPPIRGGGGEPAI--PGAPPP 141


>At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated
           protein B, putative / snRNP-B, putative / Sm protein B,
           putative similar to SP|Q05856 Small nuclear
           ribonucleoprotein associated protein B (snRNP-B) (Sm
           protein B) (Sm-B) (SmB) {Drosophila melanogaster}
          Length = 257

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -1

Query: 428 GXPXFXXXGPPPXXFXGXPXPXXGKAPISP 339
           G P      PPP  F G P P  G+ P+ P
Sbjct: 181 GPPPPYGMRPPPQQFSGPPPPQYGQRPMIP 210


>At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated
           protein B, putative / snRNP-B, putative / Sm protein B,
           putative similar to SP|Q05856 Small nuclear
           ribonucleoprotein associated protein B (snRNP-B) (Sm
           protein B) (Sm-B) (SmB) {Drosophila melanogaster}
          Length = 257

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -1

Query: 428 GXPXFXXXGPPPXXFXGXPXPXXGKAPISP 339
           G P      PPP  F G P P  G+ P+ P
Sbjct: 181 GPPPPYGMRPPPQQFSGPPPPQYGQRPMIP 210


>At3g49840.1 68416.m05449 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 606

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/60 (28%), Positives = 19/60 (31%)
 Frame = +2

Query: 464 PXPXFXPXTXPXPXKXPXGVXPPXLFXXXKXXGXXXPXXPPXIXGGGGAPXFXXXGPPPP 643
           P   + P   P     P G  PP         G      PP     G  P +   GPPPP
Sbjct: 513 PPAGYPPPQYPQAGYPPAGYPPPQ---QGYGQGYPAQGYPPPQYPQGHPPQYPYQGPPPP 569


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,916,763
Number of Sequences: 28952
Number of extensions: 288086
Number of successful extensions: 823
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)