Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_E03
(855 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY334011-1|AAR01136.1| 188|Anopheles gambiae beta-tubulin protein. 104 3e-24
AY334010-1|AAR01135.1| 188|Anopheles gambiae beta-tubulin protein. 104 3e-24
AY334009-1|AAR01134.1| 188|Anopheles gambiae beta-tubulin protein. 104 3e-24
AY334008-1|AAR01133.1| 188|Anopheles gambiae beta-tubulin protein. 104 3e-24
U50468-1|AAA93472.1| 91|Anopheles gambiae protein ( Anopheles ... 50 7e-08
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript... 24 0.54
>AY334011-1|AAR01136.1| 188|Anopheles gambiae beta-tubulin protein.
Length = 188
Score = 104 bits (250), Expect = 3e-24
Identities = 48/124 (38%), Positives = 73/124 (58%)
Frame = +1
Query: 424 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSK 603
HYT G E+VD VLD +RK + C LQGF + H LL+ ++ +Y +
Sbjct: 1 HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIM 60
Query: 604 LEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEXIYDICRRNLXIXRPTXTN 783
+++ P+P+VS VVEPYN+ L+ H +E++D + +DNE +YDIC R L + P+ +
Sbjct: 61 NTYSVVPSPKVSDTVVEPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKVPNPSYGD 120
Query: 784 LNRL 795
LN L
Sbjct: 121 LNHL 124
>AY334010-1|AAR01135.1| 188|Anopheles gambiae beta-tubulin protein.
Length = 188
Score = 104 bits (250), Expect = 3e-24
Identities = 48/124 (38%), Positives = 73/124 (58%)
Frame = +1
Query: 424 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSK 603
HYT G E+VD VLD +RK + C LQGF + H LL+ ++ +Y +
Sbjct: 1 HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIM 60
Query: 604 LEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEXIYDICRRNLXIXRPTXTN 783
+++ P+P+VS VVEPYN+ L+ H +E++D + +DNE +YDIC R L + P+ +
Sbjct: 61 NTYSVVPSPKVSDTVVEPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKVPNPSYGD 120
Query: 784 LNRL 795
LN L
Sbjct: 121 LNHL 124
>AY334009-1|AAR01134.1| 188|Anopheles gambiae beta-tubulin protein.
Length = 188
Score = 104 bits (250), Expect = 3e-24
Identities = 48/124 (38%), Positives = 73/124 (58%)
Frame = +1
Query: 424 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSK 603
HYT G E+VD VLD +RK + C LQGF + H LL+ ++ +Y +
Sbjct: 1 HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIM 60
Query: 604 LEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEXIYDICRRNLXIXRPTXTN 783
+++ P+P+VS VVEPYN+ L+ H +E++D + +DNE +YDIC R L + P+ +
Sbjct: 61 NTYSVVPSPKVSDTVVEPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKVPNPSYGD 120
Query: 784 LNRL 795
LN L
Sbjct: 121 LNHL 124
>AY334008-1|AAR01133.1| 188|Anopheles gambiae beta-tubulin protein.
Length = 188
Score = 104 bits (250), Expect = 3e-24
Identities = 48/124 (38%), Positives = 73/124 (58%)
Frame = +1
Query: 424 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSK 603
HYT G E+VD VLD +RK + C LQGF + H LL+ ++ +Y +
Sbjct: 1 HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIM 60
Query: 604 LEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEXIYDICRRNLXIXRPTXTN 783
+++ P+P+VS VVEPYN+ L+ H +E++D + +DNE +YDIC R L + P+ +
Sbjct: 61 NTYSVVPSPKVSDTVVEPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKVPNPSYGD 120
Query: 784 LNRL 795
LN L
Sbjct: 121 LNHL 124
>U50468-1|AAA93472.1| 91|Anopheles gambiae protein ( Anopheles
gambiae putativetubulin alpha chain mRNA, complete cds.
).
Length = 91
Score = 50.4 bits (115), Expect = 7e-08
Identities = 20/22 (90%), Positives = 21/22 (95%)
Frame = +1
Query: 106 MRECISVHVGQAGVQIGNACWE 171
MRECISVHVGQAGVQIGN CW+
Sbjct: 1 MRECISVHVGQAGVQIGNPCWD 22
Score = 41.1 bits (92), Expect = 4e-05
Identities = 26/68 (38%), Positives = 28/68 (41%)
Frame = +2
Query: 161 PAGSFTAWSTASSLMARCPQTRPSGVETILSTLSSARPELASTYPVXXXXXXXXXXXXXX 340
P T WS AS+ RCP+TR S ST SS R AST PV
Sbjct: 19 PCWDCTVWSMASNRTVRCPRTRRSEAVMTRSTPSSPRLAQASTCPVPCSSIWSRPSSMRC 78
Query: 341 XXAHTDSC 364
A T SC
Sbjct: 79 APARTASC 86
>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
protein.
Length = 1248
Score = 23.8 bits (49), Expect(2) = 0.54
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 212 CPQTRPSGVETILSTLSSARPELAS 286
C RPS ++ ++ S RP+LA+
Sbjct: 164 CGSARPSRIDVAFASPSICRPDLAA 188
Score = 21.8 bits (44), Expect(2) = 0.54
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 155 VMPAGSFTAWSTASSLMARCPQTRPSGV 238
V+ AG F AW TA +T+P G+
Sbjct: 116 VLLAGDFNAWHTAWG----SERTKPKGI 139
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 850,263
Number of Sequences: 2352
Number of extensions: 17993
Number of successful extensions: 46
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 90959220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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