Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_E02
(849 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 34 0.022
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ... 30 0.48
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 29 1.1
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 1.9
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 28 1.9
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 27 2.5
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1... 27 2.5
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 3.4
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 27 4.4
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 4.4
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch... 27 4.4
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 26 7.8
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce... 26 7.8
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 7.8
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 34.3 bits (75), Expect = 0.022
Identities = 22/67 (32%), Positives = 28/67 (41%)
Frame = +2
Query: 524 YASSHPPLAISATSTRSSNPRFHTPTTPDLTSISINPLNAVLXGVRAGVKASVVIRGSIS 703
Y SS IS +ST N FH PT TS S A GV + S+ + + S
Sbjct: 795 YLSSSSSRTISTSSTNEYNTSFHAPTVSSTTSSSSTTSLAANKGVNSNSITSLNLESTSS 854
Query: 704 VSHPLVT 724
V+ T
Sbjct: 855 VTSTAYT 861
>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 29.9 bits (64), Expect = 0.48
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 535 PPSPGDLGYINPIIKSPIPYTNHPRLNIHFHQSPE 639
PP PGD+ + NP++ P + P +F +PE
Sbjct: 218 PPQPGDIVFSNPMLGGPDHKVSQPSETENFLPTPE 252
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 28.7 bits (61), Expect = 1.1
Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +3
Query: 279 TGTETKSNSVTV-QSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 449
TG +T+ QSL N+S S I R N A FPS S +P VDL
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366
Query: 450 DVTVEGVNVLATPSSS 497
DV+ E L+TP S
Sbjct: 367 DVSDEEQRFLSTPLGS 382
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.9 bits (59), Expect = 1.9
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +3
Query: 567 PDHQIPDSIHQPPQT*HPFPSIP*TPYXKEFAPGLKPPLSSEAP--SAYLTPSSLGMAKG 740
P P S +PP + P PSIP P +P PP+ S+AP + L P + A
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIP-PP-----SPASAPPIPSKAPPIPSSLPPPAQPAAPV 181
Query: 741 VSPP 752
SPP
Sbjct: 182 KSPP 185
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 27.9 bits (59), Expect = 1.9
Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Frame = +3
Query: 558 LHQPDHQIPDSIHQPPQT*HPFPSIP*TPYXKEFAPGLKPPLSSEAPSAYLT--PSSLGM 731
+ QP +P + PP PFP P P PP AP +Y T S+L
Sbjct: 519 MSQPP-MVPPGMALPPGMPAPFPGYPAVPAMPGIPGATAPP---GAPGSYNTSESSNLNA 574
Query: 732 AKGVSPP 752
GVS P
Sbjct: 575 PPGVSMP 581
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.5 bits (58), Expect = 2.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 530 SSHPPLAISATSTRSSNPRFHTPTTPDLTSIS 625
+S PP ++S+ FHTPT P T +S
Sbjct: 120 NSSPPNSLSSQPKHQEFHLFHTPTIPRTTQLS 151
>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 27.5 bits (58), Expect = 2.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -3
Query: 526 IRARPPIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILR 407
I A P +R AS+ TP+ T+A+ QQ GI+R
Sbjct: 9 IPAEPSAAVRSGNAAASS-TPNMKTAAIQQQIDDTVGIMR 47
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.1 bits (57), Expect = 3.4
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 261 RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD-AYLVN 374
R+Y L T ++S + PN S + +GY + A+L+N
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLIN 2878
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 26.6 bits (56), Expect = 4.4
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +2
Query: 548 AISATSTRSSNPRFHTPTTPDLTSISINPLNAVLXGVRAGVKASV 682
A+ ++ S F PTT S+SI+P + V+A V
Sbjct: 69 AVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADV 113
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 4.4
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +3
Query: 342 IKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 431
+K RD YL NLEA FPS+ +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404
>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 683
Score = 26.6 bits (56), Expect = 4.4
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +2
Query: 524 YASSHPPLAISATSTRSSNPRFHTPTTPDLTSISINPLNAVLXGVRAGVKASVVIRGSIS 703
YA +HP L I A +T + + PT L +++I + + G A +R ++
Sbjct: 80 YAKTHPDLCILAVNTFVKDSEEYNPT---LRALAIRTMGCIRVNKIIGYLAD-PLRKALK 135
Query: 704 VSHPLV 721
HP V
Sbjct: 136 DEHPYV 141
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 7.8
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -3
Query: 511 PIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILRLGAEGKTTAS 377
P ++E + TL +T+T V + + +L++ AEGK TAS
Sbjct: 507 PEEIKERIAIPKTLI-ATITLPDVSPNAKIELVLQIDAEGKLTAS 550
>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 357
Score = 25.8 bits (54), Expect = 7.8
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -2
Query: 101 GVWKKRKH*PRREWPKRQKRXKAQF 27
G WKK + + EW K ++ KA++
Sbjct: 119 GEWKKAREEDKAEWKKAREEDKAEW 143
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 7.8
Identities = 17/70 (24%), Positives = 26/70 (37%)
Frame = +3
Query: 279 TGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVT 458
T T S +T + +S+ Y + + + S P PVT C T+ V
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539
Query: 459 VEGVNVLATP 488
V +TP
Sbjct: 540 YTSTPVTSTP 549
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,205,949
Number of Sequences: 5004
Number of extensions: 64372
Number of successful extensions: 259
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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