Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_E02
(849 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1310 + 29238644-29240260 36 0.031
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 33 0.38
07_01_0373 + 2783596-2784933 31 0.88
04_04_0316 - 24338774-24339367 31 1.2
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 30 2.0
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 29 3.5
04_01_0041 - 464695-464850,467485-469029 29 6.2
02_05_0158 - 26362259-26362695,26363732-26363903 29 6.2
02_02_0369 - 9505330-9505652,9507262-9507532,9507649-9507690,950... 29 6.2
01_05_0227 - 19512866-19514983 29 6.2
11_04_0307 + 16185405-16185713,16185847-16185942,16186626-161867... 28 8.2
08_02_1615 + 28257275-28258428,28258523-28259144 28 8.2
03_05_0824 + 27980191-27980243,27980633-27980671,27980974-279820... 28 8.2
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595... 28 8.2
>06_03_1310 + 29238644-29240260
Length = 538
Score = 36.3 bits (80), Expect = 0.031
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +3
Query: 573 HQIPDSIHQPPQT*HPFPSIP*TPYXKEFAPGLKPPLSSEAPSAYLTPS-SLGMAKGVSP 749
H+ P H PP+ P P P +P P PP SE+P + + PS S + G SP
Sbjct: 381 HRSPLPHHMPPRRTPPTPPPPSSPTPSHLPP--PPPTYSESPKSSMPPSTSPPSSHGASP 438
Query: 750 P 752
P
Sbjct: 439 P 439
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 32.7 bits (71), Expect = 0.38
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +2
Query: 545 LAISATSTRSSNPRFHTPTTPDLTSISINPLNAVLXGVRAGVKASVVIRGSISVSHP 715
+A S+T+TR S PR H PTTP S + + +RA +V+ G+ + HP
Sbjct: 1 MAASSTATRLSPPRLHAPTTP---SPHLPLRRSRFSPLRAAKLEAVLTIGTHLIPHP 54
>07_01_0373 + 2783596-2784933
Length = 445
Score = 31.5 bits (68), Expect = 0.88
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = -1
Query: 93 EEEKALTKEGMAEAAETXKGTISSMNRS 10
E+++ LTK G + +ET KG++ S++RS
Sbjct: 151 EQQQQLTKSGCSSTSETSKGSVLSLSRS 178
>04_04_0316 - 24338774-24339367
Length = 197
Score = 31.1 bits (67), Expect = 1.2
Identities = 22/67 (32%), Positives = 30/67 (44%)
Frame = +3
Query: 540 LPWRSRLHQPDHQIPDSIHQPPQT*HPFPSIP*TPYXKEFAPGLKPPLSSEAPSAYLTPS 719
LPWR+R QP +P+ + PPQ S + + + AP L EA L P
Sbjct: 101 LPWRARPQQP---LPEEQNPPPQETSASSSSSSSTHVR-IAPEEPGDLDLEAQDQLLPPP 156
Query: 720 SLGMAKG 740
+ G KG
Sbjct: 157 ATGSPKG 163
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 30.3 bits (65), Expect = 2.0
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +3
Query: 540 LPWRSRLHQPDHQIPDSIHQPPQT*HPFPSIP-*TPYXKEFA-PGLKPPLSSEAPSAYLT 713
LP R+R+ +PD + D + + P+ S P PY F+ P PP +PS L
Sbjct: 332 LPARARVLRPDELLLDHYYYHSSSSDPYYSTPILPPYGDAFSPPNPPPPPPPMSPSCLLP 391
Query: 714 P 716
P
Sbjct: 392 P 392
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 29.5 bits (63), Expect = 3.5
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +3
Query: 285 TETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSL--KIPVTVDLCWTTADVT 458
TE +N V V L SS GY D + ++ V + K+ V +D TAD++
Sbjct: 167 TEAGANRVLVCDLH--SSQAMGYFDIPVDHVYGQVMNLIGDVRGKVAVMMDDMIDTADIS 224
Query: 459 VEGVNVLATPSSSRITIGGLALMHQ 533
+ +N+L P G L+HQ
Sbjct: 225 LPNINILMKPIKLGTIAKGAELLHQ 249
>04_01_0041 - 464695-464850,467485-469029
Length = 566
Score = 28.7 bits (61), Expect = 6.2
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 246 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPV 422
+I R + D++ T +SN + V +LP VSS + Y D ++ + P P ++ V
Sbjct: 40 LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99
Query: 423 TVD 431
+D
Sbjct: 100 PLD 102
>02_05_0158 - 26362259-26362695,26363732-26363903
Length = 202
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +2
Query: 521 PYASSHPPLAISATSTRSSNPRFHTP-TTPDLTS 619
P ASS PP + + +T SS+P TP +TPD T+
Sbjct: 132 PTASSSPP-STATPATPSSDPGMDTPSSTPDATT 164
>02_02_0369 -
9505330-9505652,9507262-9507532,9507649-9507690,
9508416-9508458,9508853-9508860
Length = 228
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Frame = +3
Query: 618 PFPSIP*TPYXKEFAPGLKPPLSSEAPSAYLT--PSSLGMAKGVSPP 752
P P P P APG P S P+ Y T P G G PP
Sbjct: 158 PLPRPPTLPPPTSGAPGAPIPNSGAPPAMYQTNPPQPAGPTSGAPPP 204
>01_05_0227 - 19512866-19514983
Length = 705
Score = 28.7 bits (61), Expect = 6.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 463 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 371
S +T + +QQ + ++ LG GKTT ++L
Sbjct: 18 SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48
>11_04_0307 +
16185405-16185713,16185847-16185942,16186626-16186730,
16186938-16187090,16188395-16188478,16188566-16188694,
16188986-16189165,16189555-16189677,16189678-16189794,
16189889-16190053
Length = 486
Score = 28.3 bits (60), Expect = 8.2
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +3
Query: 600 PPQT*HPFPSIP*TPYXKEFAPGLKPPLSSEAPSAYLTPSSLGMAKGVS 746
PP + P P +P PY + +P PP P + P S A G S
Sbjct: 22 PPSSSSPSPPVPPDPYGADLSP---PPPPPPKPPPTVPPPSYEQAVGSS 67
>08_02_1615 + 28257275-28258428,28258523-28259144
Length = 591
Score = 28.3 bits (60), Expect = 8.2
Identities = 19/62 (30%), Positives = 24/62 (38%)
Frame = +3
Query: 564 QPDHQIPDSIHQPPQT*HPFPSIP*TPYXKEFAPGLKPPLSSEAPSAYLTPSSLGMAKGV 743
QP H H PQ+ HP P P AP PP S P ++ + L K +
Sbjct: 32 QPPHSHLLHHHHSPQS-HPQPDAPAAAAPPPPAPLTPPPPKSPPPPPHIQTTDLPPPKPL 90
Query: 744 SP 749
P
Sbjct: 91 PP 92
>03_05_0824 +
27980191-27980243,27980633-27980671,27980974-27982023,
27983097-27983262,27983439-27983549,27983637-27983688,
27984691-27984859,27985604-27985883
Length = 639
Score = 28.3 bits (60), Expect = 8.2
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Frame = +3
Query: 402 PSLKIPVTVDL--CWTTADVTVEGVNVLATPSSSRITIGGLALMHQATLPWRSR--LHQP 569
P KIP +++ C T+ D T ++ S+ +ITIG L L+ + WR R LH+P
Sbjct: 220 PGSKIPCNLEVSDCLTSHDGTSA-----SSSSNEKITIGLLFLLQKLCKNWRLRRFLHRP 274
>02_05_0788 +
31758119-31758384,31758482-31758634,31759385-31759509,
31759650-31759678,31760943-31761008,31761059-31761125,
31761226-31761370,31761404-31761451,31762014-31762182,
31762645-31762779,31762858-31763064,31763608-31763735,
31763815-31763866,31764046-31764060,31764502-31764609
Length = 570
Score = 28.3 bits (60), Expect = 8.2
Identities = 21/86 (24%), Positives = 36/86 (41%)
Frame = +3
Query: 237 QRLIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 416
Q I + ++ L N TV + N + GY+ +N+ + PSLK
Sbjct: 198 QVFCIVLEMFFYQLLQLLKVPNEKTVNVIENAIQTLPGYQPPKHINIGEYISSHVPSLK- 256
Query: 417 PVTVDLCWTTADVTVEGVNVLATPSS 494
D C T ++ +EG++ L S+
Sbjct: 257 ----DFCEPTVEM-LEGMSALKALST 277
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,575,522
Number of Sequences: 37544
Number of extensions: 501793
Number of successful extensions: 1545
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1543
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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