Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_E02
(849 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09) 31 1.2
SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3) 29 3.6
SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35) 29 3.6
SB_30122| Best HMM Match : YadA (HMM E-Value=2) 29 4.8
SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0) 29 4.8
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18) 29 4.8
SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0) 29 6.3
SB_27417| Best HMM Match : zf-CCHC (HMM E-Value=0.00021) 28 8.3
SB_23207| Best HMM Match : zf-CCHC (HMM E-Value=0.00021) 28 8.3
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)
Length = 458
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +2
Query: 416 TSHS*PLLDYC*RHS*RSQCAGHPFILSHYYWRSRPY--ASSHPPLAI 553
T + LL YC R AGHPF+L Y + R Y +S PL I
Sbjct: 91 TKYDIDLLGYCTEQEIRRVVAGHPFLLDGYKFDLRVYVLVTSCDPLRI 138
>SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3)
Length = 474
Score = 29.5 bits (63), Expect = 3.6
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = -2
Query: 458 CDVSSSPTKVNCDWYFEARGGRKNDSLKIDKIRVAVAFYDGGDVR**LHSDTVRFGFGAS 279
C + P + W+F + G K DS + + + G V +HS VR G GA+
Sbjct: 275 CVRAHLPNAADQPWFFLSNTGAKIDSNNVQSLLRSFQRSTGVQVSKPIHSTAVRCGSGAT 334
Query: 278 KIE 270
+ E
Sbjct: 335 EEE 337
>SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)
Length = 2748
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +2
Query: 596 PTTPDLTSISINPLNAVLXGVRAGVKASVVIRGSI--SVSHPLVTG 727
PT+P++TS S P ++AG + VV+ ++ SV P++ G
Sbjct: 1911 PTSPEMTSRSGQPFKRFTKHIKAGDRLRVVMGSTVLKSVLQPVIQG 1956
>SB_30122| Best HMM Match : YadA (HMM E-Value=2)
Length = 408
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 396 SAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSSRIT 506
S P K+P+T T+A+VT +++ +PS + +T
Sbjct: 239 SRPETKVPITTIGASTSAEVTTSQRDLMPSPSQAHVT 275
>SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)
Length = 1433
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
Frame = +3
Query: 270 FDLTGTETKSNSVTVQS---LPNVSSIIKGYRDAYLVNL 377
F +TG E KS+S+T++ +P V ++ +G D +LV+L
Sbjct: 485 FTITGQEGKSDSITIRHADVIPRV-ALARGNEDVFLVHL 522
>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
Length = 796
Score = 29.1 bits (62), Expect = 4.8
Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +2
Query: 515 SRPYASSHPPLAISATSTRSSN-PRFHTPTTPDLTSISINP 634
S P P IS TS SS PR H PTTP T + P
Sbjct: 249 STPRHHGEPQTTISITSIISSAIPRGHLPTTPSTTPQATPP 289
>SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 1918
Score = 28.7 bits (61), Expect = 6.3
Identities = 20/78 (25%), Positives = 28/78 (35%)
Frame = +3
Query: 525 MHQATLPWRSRLHQPDHQIPDSIHQPPQT*HPFPSIP*TPYXKEFAPGLKPPLSSEAPSA 704
M P R+ H S+ P + H PS + PG P S +
Sbjct: 64 MQNPVSPHRTYQHNLPRGSQSSVPPSPHSYHSAPSPSRYAGPSAYMPGAISPSSGICTPS 123
Query: 705 YLTPSSLGMAKGVSPPYF 758
TPSS+ +SP +F
Sbjct: 124 CATPSSVMSPGPISPDFF 141
>SB_27417| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)
Length = 538
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 524 YASSHPPLAISATSTRSSNPRFHTPTTPDLTSIS 625
Y S PPL++ + ST + +P TP TSIS
Sbjct: 502 YKGSEPPLSVCSFSTLNVDPPTPNSPTPISTSIS 535
>SB_23207| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)
Length = 260
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 524 YASSHPPLAISATSTRSSNPRFHTPTTPDLTSIS 625
Y S PPL++ + ST + +P TP TSIS
Sbjct: 224 YKGSEPPLSVCSFSTLNVDPPTPNSPTPISTSIS 257
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 28.3 bits (60), Expect = 8.3
Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Frame = +3
Query: 567 PDHQIPDSIHQPPQT*HPFPSIP*TPYXKEF---APGLKPPLSSEAPSAYLTPSSLGMAK 737
P + P + PP P+P P PY P PP + P Y P +
Sbjct: 130 PPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNPPPPNAPYPPPPYPPPPNPPYPP 189
Query: 738 GVSPPY 755
+PPY
Sbjct: 190 PPNPPY 195
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,632,095
Number of Sequences: 59808
Number of extensions: 510064
Number of successful extensions: 1680
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1670
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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