Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_E02
         (849 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    31   0.78 
U00046-6|AAN65305.1|  422|Caenorhabditis elegans Mammalian zak k...    31   1.4  
U00046-5|AAC47047.4|  516|Caenorhabditis elegans Mammalian zak k...    31   1.4  
Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AL132862-11|CAB60541.1|  396|Caenorhabditis elegans Hypothetical...    29   3.2  
AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.      29   3.2  
AF038611-3|AAB92036.2|  333|Caenorhabditis elegans Hypothetical ...    29   5.5  
L14730-2|AAB37562.2|  187|Caenorhabditis elegans C.elegans homeo...    28   7.3  
AY647457-1|AAT67384.1|  187|Caenorhabditis elegans homeobox gene...    28   7.3  
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical...    28   9.6  
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical...    28   9.6  

>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +3

Query: 543 PWRSRLHQPDHQIPDSIHQP-PQT*HPFPSIP*TPYXKEFAPGLKPPLSSEAPSAYLTPS 719
           P+  +  QP    P     P PQ   P P+ P  PY +   P   PPL+S   +A   P+
Sbjct: 37  PYVEQSAQPQQTAPPPPPAPYPQQAVPAPAPPPAPYPQHAVPAPAPPLASYPQNAVPVPA 96


>U00046-6|AAN65305.1|  422|Caenorhabditis elegans Mammalian zak
           kinase homolog protein1, isoform b protein.
          Length = 422

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 224 GTVSSTFDHPFSTPVLRSYWHRNQ 295
           G +++ F H  S+P LR +WHR Q
Sbjct: 306 GHLNNGFHHTTSSPQLRGFWHRKQ 329


>U00046-5|AAC47047.4|  516|Caenorhabditis elegans Mammalian zak
           kinase homolog protein1, isoform a protein.
          Length = 516

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 224 GTVSSTFDHPFSTPVLRSYWHRNQ 295
           G +++ F H  S+P LR +WHR Q
Sbjct: 400 GHLNNGFHHTTSSPQLRGFWHRKQ 423


>Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical protein
            K04G2.8b protein.
          Length = 1188

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
 Frame = +2

Query: 227  TVSSTFDHPFSTPVLRSYWHRNQIEQCHCAITTERLLHH---KRLP--RRVSCQS*GCRF 391
            T S  + HP ++P+ +S  HR Q  +   A   +RLL       +P  R +S +  G + 
Sbjct: 807  TSSPAWSHPDTSPIPKSSSHRTQPNRRQDASDADRLLMESIMSEMPKSRIISPRLAGTQQ 866

Query: 392  SFRP*PQNTSHS 427
               P P+  SHS
Sbjct: 867  YLEPEPERRSHS 878


>Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical protein
            K04G2.8a protein.
          Length = 1186

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
 Frame = +2

Query: 227  TVSSTFDHPFSTPVLRSYWHRNQIEQCHCAITTERLLHH---KRLP--RRVSCQS*GCRF 391
            T S  + HP ++P+ +S  HR Q  +   A   +RLL       +P  R +S +  G + 
Sbjct: 805  TSSPAWSHPDTSPIPKSSSHRTQPNRRQDASDADRLLMESIMSEMPKSRIISPRLAGTQQ 864

Query: 392  SFRP*PQNTSHS 427
               P P+  SHS
Sbjct: 865  YLEPEPERRSHS 876


>AL132862-11|CAB60541.1|  396|Caenorhabditis elegans Hypothetical
           protein Y73F8A.16 protein.
          Length = 396

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 255 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD 359
           F  L F++TG E KS  V + S+    +I  GYR+
Sbjct: 37  FPELNFNITGLEEKSRYVVLLSIEKYDNIRYGYRN 71


>AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.
          Length = 1186

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
 Frame = +2

Query: 227  TVSSTFDHPFSTPVLRSYWHRNQIEQCHCAITTERLLHH---KRLP--RRVSCQS*GCRF 391
            T S  + HP ++P+ +S  HR Q  +   A   +RLL       +P  R +S +  G + 
Sbjct: 805  TSSPAWSHPDTSPIPKSSSHRTQPNRRQDASDADRLLMESIMSEMPKSRIISPRLAGTQQ 864

Query: 392  SFRP*PQNTSHS 427
               P P+  SHS
Sbjct: 865  YLEPEPERRSHS 876


>AF038611-3|AAB92036.2|  333|Caenorhabditis elegans Hypothetical
           protein E04A4.1 protein.
          Length = 333

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = +2

Query: 542 PLAISATSTRSSNPRFHTPTTPDLTSISINPLNAVLXGVRAGVKASVV 685
           P  +     +SSN  FH     DL   S+   NA L   R G+KA  V
Sbjct: 8   PFQLLKLPQKSSNYVFHRMLVADLIGFSLTSKNAKLQTKRLGLKAEDV 55


>L14730-2|AAB37562.2|  187|Caenorhabditis elegans C.elegans homeobox
           protein 16 protein.
          Length = 187

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 515 SRPYASSHPPLAISATSTRSSNPRFHTPT-TPDLTS 619
           S PY    P ++  ATS  S +P F +P  TP++ S
Sbjct: 12  SSPYPCPSPTISTPATSPSSISPTFASPNGTPNIAS 47


>AY647457-1|AAT67384.1|  187|Caenorhabditis elegans homeobox gene 16
           protein.
          Length = 187

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 515 SRPYASSHPPLAISATSTRSSNPRFHTPT-TPDLTS 619
           S PY    P ++  ATS  S +P F +P  TP++ S
Sbjct: 12  SSPYPCPSPTISTPATSPSSISPTFASPNGTPNIAS 47


>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18b protein.
          Length = 1459

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 678  PLSSEAPSAYLTPSSLGMAKGVSPP 752
            P+++EAP+A   PS   + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227


>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18a protein.
          Length = 1456

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 678  PLSSEAPSAYLTPSSLGMAKGVSPP 752
            P+++EAP+A   PS   + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,889,352
Number of Sequences: 27780
Number of extensions: 373219
Number of successful extensions: 1257
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1256
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)