Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_E02
(849 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g35190.1 68418.m04170 proline-rich extensin-like family prote... 31 0.73
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 31 0.97
At5g63610.1 68418.m07986 protein kinase, putative similar to cyc... 30 1.7
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex... 30 2.2
At2g24980.1 68415.m02987 proline-rich extensin-like family prote... 29 3.0
At5g55020.1 68418.m06853 myb family transcription factor (MYB120... 29 5.2
At5g50780.1 68418.m06291 ATP-binding region, ATPase-like domain-... 29 5.2
At5g06630.1 68418.m00749 proline-rich extensin-like family prote... 29 5.2
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 29 5.2
At4g32380.1 68417.m04611 glycoside hydrolase family 28 protein /... 28 6.8
At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family... 28 6.8
At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid t... 28 6.8
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 28 6.8
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 28 6.8
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 28 6.8
At5g49080.1 68418.m06074 proline-rich extensin-like family prote... 28 9.0
At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1 (MSH... 28 9.0
>At5g35190.1 68418.m04170 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 328
Score = 31.5 bits (68), Expect = 0.73
Identities = 20/76 (26%), Positives = 31/76 (40%)
Frame = +3
Query: 528 HQATLPWRSRLHQPDHQIPDSIHQPPQT*HPFPSIP*TPYXKEFAPGLKPPLSSEAPSAY 707
HQ T + S +H+ + + P + P P + ++ P KP L + P Y
Sbjct: 28 HQ-TPQYNSPVHKHESSYSPKKYSPYYSASPLPPLQYRRQGPKYTPHPKPYLFNSPPPPY 86
Query: 708 LTPSSLGMAKGVSPPY 755
+PS K PPY
Sbjct: 87 YSPSPKEDYKSPPPPY 102
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 31.1 bits (67), Expect = 0.97
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = +3
Query: 561 HQPDHQIPDSIHQPPQT*HPFPSIP*TPYXKEFAP-GLKPPLSSEAPSAYLTPSSLGMAK 737
+ P HQ+P S H P H P + P G PP S P ++ P S+GM
Sbjct: 589 NMPHHQLPPSSHMPLHPHH-------LPRPMQMPPHGHMPPPS--MPMSHQMPGSMGMQG 639
Query: 738 GVSPPYFQ 761
G++P Q
Sbjct: 640 GMNPQMSQ 647
>At5g63610.1 68418.m07986 protein kinase, putative similar to
cyclin-dependent kinase cdc2MsE [Medicago sativa]
gi|1806144|emb|CAA65981; contains protein kinase domain,
Pfam:PF00069
Length = 470
Score = 30.3 bits (65), Expect = 1.7
Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Frame = +2
Query: 494 LSHYYWRSRPYASSHPPLAISATSTRSSNPRFHTPTTPDLT-SISINPLNAVLXGVRAGV 670
L H Y+R P + +A + P T D + SINP AV G AG
Sbjct: 328 LEHEYFRMDPLPGRNAFVASQPMEKNVNYPTRPVDTNTDFEGTTSINPPQAVAAGNVAGN 387
Query: 671 KASVVIRGSISVSHPLV 721
A GS S+ P+V
Sbjct: 388 MAGAHGMGSRSMPRPMV 404
>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 699
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Frame = +3
Query: 567 PDHQIPDSIHQPPQT*H--PFPSIP*TPYXKEFAPGLKPPLSSEAPSAYLTPSSLGMAKG 740
P + P +H PP H P P+ +P +P PP+ S P + P S
Sbjct: 578 PVYSPPPPVHSPPPPVHSPPPPAPVHSPPPPVHSPPPPPPVYSPPPPVFSPPPSQSPPVV 637
Query: 741 VSPP 752
SPP
Sbjct: 638 YSPP 641
>At2g24980.1 68415.m02987 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 559
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 654 EFAPGLKPPLSSEAPSAYLTPSSLGMAKGVSPPY 755
++AP KP + S P Y TPS K PPY
Sbjct: 44 KYAPHPKPYVKSSPPPQYYTPSPKVNYKSPPPPY 77
>At5g55020.1 68418.m06853 myb family transcription factor (MYB120)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 523
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Frame = +2
Query: 503 YYWRSRPYASSHPPLAISATS----TRSSNPRF-HTPTTPDLTSISINPL 637
Y+ + PY+SS P +++ +S T +S+P F H+ TP TS NP+
Sbjct: 336 YHNTNNPYSSS-PSFSLNPSSSSYPTSTSSPSFLHSHYTPSSTSFHTNPV 384
>At5g50780.1 68418.m06291 ATP-binding region, ATPase-like
domain-containing protein low similarity to microrchidia
[Homo sapiens] GI:5410257; contains Pfam profile
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein
Length = 823
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = +2
Query: 527 ASSHPPLAISATSTRSSNPRFHTPTTPDLTSISINPLNAVLXGVRAGVKAS 679
ASS S+ T ++ PRF+TPT S NP + V G + VK S
Sbjct: 601 ASSRKRTVPSSFKTPTAAPRFNTPTA---ASEKFNPRSNVNGGGKGSVKVS 648
>At5g06630.1 68418.m00749 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 440
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 654 EFAPGLKPPLSSEAPSAYLTPSSLGMAKGVSPPY 755
++AP KP + S P Y TPS K PPY
Sbjct: 50 KYAPHPKPYVYSSPPPPYYTPSPKVNYKSPPPPY 83
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = +3
Query: 582 PDSIHQPPQT*HPFPSIP*TPYXKEFAPGLKPPLSSEAPSAYLTPSSLGMAKG 740
P+ HQP H P PY ++ PG +P S A SA ++P S G
Sbjct: 410 PNHHHQPSPMQHYAPPPAAYPYPQQPGPGSRPAPSPTAVSA-ISPDSAPAGSG 461
>At4g32380.1 68417.m04611 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
polygalacturonase [Lycopersicon esculentum] GI:4325090;
contains PF00295: Glycosyl hydrolases family 28
(polygalacturonases)
Length = 354
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 537 TLPWRSRLHQPDHQIPDSIHQPPQT*HPFPSIP*TPYXKEFAPGLKPPL 683
++P H D Q P S++ P P+ P TP+ + AP +PPL
Sbjct: 290 SIPITCSFHTEDSQ-PASLNPQPSA--PYAISPTTPHTQPHAPTTQPPL 335
>At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family
protein
Length = 421
Score = 28.3 bits (60), Expect = 6.8
Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Frame = +3
Query: 561 HQPDHQIPDSIHQPPQ---T*HPFP-SIP*TPYXKEFAPGLKPPLSSEAPSAYLTP 716
HQP HQ P PPQ + P P S+P F+ P S PS Y P
Sbjct: 262 HQPYHQDPPKHMPPPQNYSSHEPSPNSLPNFQSYPSFSESSLPSTSPHYPSHYQNP 317
>At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 428
Score = 28.3 bits (60), Expect = 6.8
Identities = 20/63 (31%), Positives = 24/63 (38%)
Frame = +3
Query: 567 PDHQIPDSIHQPPQT*HPFPSIP*TPYXKEFAPGLKPPLSSEAPSAYLTPSSLGMAKGVS 746
P + P +PP P P IP P + P KPP P Y+ P K
Sbjct: 52 PTVKPPTHTPKPPTVKPPPPYIPCPP--PPYTP--KPPTVKPPPPPYVKPPPPPTVKPPP 107
Query: 747 PPY 755
PPY
Sbjct: 108 PPY 110
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/64 (26%), Positives = 23/64 (35%)
Frame = +3
Query: 525 MHQATLPWRSRLHQPDHQIPDSIHQPPQT*HPFPSIP*TPYXKEFAPGLKPPLSSEAPSA 704
+H P S P H P +H PP H P +P +P P+ S P
Sbjct: 756 VHSPPPPVHSPPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPSPIYSPPPPV 815
Query: 705 YLTP 716
+ P
Sbjct: 816 FSPP 819
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = +3
Query: 567 PDHQIPDSIHQPPQT*HPFPSIP*TPYXKEFAPGLKPPLSSEAPSAYLTP 716
P H P +H PP H P +P +P PP+ S P Y P
Sbjct: 541 PVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSP--PPPVHSPPPPVYSPP 588
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = +3
Query: 567 PDHQIPDSIHQPPQT*HPFPSIP*TPYXKEFAPGLKPPLSSEAPSAYLTP 716
P H P +H PP H P +P ++P PP+ S P + P
Sbjct: 555 PVHSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPP-PPPVHSPPPPVHSPP 603
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +3
Query: 582 PDSIHQPPQT*HPFPSIP*TPYXKEFAPGLKPPLSSEAPSAYLTP 716
P +H PP H P +P ++P PP+ S P + P
Sbjct: 589 PPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPPPVHSPPPPVFSPP 633
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 28.3 bits (60), Expect = 6.8
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +3
Query: 543 PWRSRLHQPDHQIPDSIHQPPQT*HPFPSIP*TPYXKEFAPGLKPPLSSEAPSAYLTP 716
P ++R P ++ D+ PPQ P PS P +P ++P PP+ S P Y +P
Sbjct: 516 PVKNRRSPPPPKVEDTRVPPPQPPMPSPSPP-SPI---YSP--PPPVHSPPPPVYSSP 567
>At5g49080.1 68418.m06074 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 609
Score = 27.9 bits (59), Expect = 9.0
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
Frame = +3
Query: 567 PDHQIPDSIHQPPQ-T*HPFPSIP*TPYXKEFAPGLK-------PP-LSSEAPSAYLTPS 719
P + P H+ P+ T H P I +P ++P K PP + S P Y TPS
Sbjct: 31 PQYNFPSHQHKSPKYTPHSKPYIYNSPPPPYYSPSPKVNYKSPPPPYVYSSPPPPYYTPS 90
Query: 720 SLGMAKGVSPPY 755
K PPY
Sbjct: 91 PKVDYKSPPPPY 102
>At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1
(MSH6-1) (AGAA.3) identical to SP|O04716 DNA mismatch
repair protein MSH6-1 (AtMsh6-1) cress] {Arabidopsis
thaliana}
Length = 1324
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +3
Query: 315 QSLPNVSSIIKGYRDAY 365
QSLPN+SS IK ++DA+
Sbjct: 854 QSLPNISSSIKYFKDAF 870
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,426,938
Number of Sequences: 28952
Number of extensions: 377196
Number of successful extensions: 1336
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1315
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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