Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_E01
         (830 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    27   3.3  
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    27   3.3  
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    26   7.5  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    26   7.5  
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||...    26   7.5  

>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 289  SWRRYKILKQSHPVKRMIRGIGAETTSTYSQ 381
            S + YK L Q + VK ++  + +ET S+Y++
Sbjct: 1082 SAKNYKSLIQKYKVKSVLSAVDSETASSYAK 1112


>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +3

Query: 537 YICQRITQVS*GQL--SEDRNLAWSKRAKAGLIXMFSTHRDCESTAY 671
           Y+C  +  +S G L  SED ++ W    K GLI  F    + E+  Y
Sbjct: 127 YVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQFIKDVNWENLDY 173


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -1

Query: 470 DERFRHVTTLHAWNETPFVRVSRSSHPFK 384
           DE+  ++T  H WN      V R S P K
Sbjct: 34  DEKIEYITAQHDWNPVYEAVVPRKSKPGK 62


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 654  SPYAY*TXGSSQLLPFCSTRGF 589
            SPYA+ T  S+ L PF STR +
Sbjct: 1211 SPYAFSTVYSNCLNPFISTRSY 1232


>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 727 GITGLVAAQAFIATLLFDPSXSALPIIA 810
           GI G+V    F  +L F P  S++P+ A
Sbjct: 406 GILGMVVGICFFISLFFAPIFSSIPVWA 433


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,391,442
Number of Sequences: 5004
Number of extensions: 72785
Number of successful extensions: 149
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)