Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_E01
         (830 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276485-1|CAB81951.1|  283|Homo sapiens integral membrane trans...    59   2e-08
BC114377-1|AAI14378.1|   44|Homo sapiens Unknown (protein for MG...    46   1e-04

>AJ276485-1|CAB81951.1|  283|Homo sapiens integral membrane
           transporter protein protein.
          Length = 283

 Score = 59.3 bits (137), Expect = 2e-08
 Identities = 25/34 (73%), Positives = 29/34 (85%)
 Frame = +3

Query: 132 MVNYAWSGRSQGKP*WRTVAILTCKSIVGTGYRG 233
           MVNYAW+GRSQ K  WR+VA+LTCKS+V  GYRG
Sbjct: 1   MVNYAWAGRSQRKLWWRSVAVLTCKSVVRPGYRG 34


>BC114377-1|AAI14378.1|   44|Homo sapiens Unknown (protein for
           MGC:134704) protein.
          Length = 44

 Score = 46.4 bits (105), Expect = 1e-04
 Identities = 25/45 (55%), Positives = 29/45 (64%)
 Frame = -1

Query: 806 MIGRAXXEGSKSNVAMNAWAATSPVIPCGNFFWHLXLKTLYTKGS 672
           MIGRA  EGSKS+VAMNAW   +   PCGNF     LK   ++GS
Sbjct: 1   MIGRADIEGSKSDVAMNAWPPQAS-YPCGNFSDTSCLKPKRSEGS 44


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,699,888
Number of Sequences: 237096
Number of extensions: 2903149
Number of successful extensions: 9341
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9338
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10426655866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)