Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_E01
         (830 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49600.1 68416.m05421 ubiquitin-specific protease 26 (UBP26) ...    31   0.94 
At3g16260.1 68416.m02051 metallo-beta-lactamase family protein         29   3.8  
At1g77240.1 68414.m08996 AMP-binding protein, putative strong si...    29   5.0  
At3g62370.1 68416.m07006 expressed protein                             28   8.7  

>At3g49600.1 68416.m05421 ubiquitin-specific protease 26 (UBP26)
            similar to GI:11993492; RNA binding protein - Homo
            sapiens, EMBL:AB016089 (N-terminus), several ubiquitin
            carboxyl-terminal hydrolases from aa pos. 712
          Length = 1067

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 140  LCLVRSKSGETLMEDRSDSDVQIDRRNWV*GRKTN 244
            +C VR K     M + SDS  ++DRR     R+TN
Sbjct: 928  VCFVRGKEAPKAMLEASDSSFEVDRRTSKRSRRTN 962


>At3g16260.1 68416.m02051 metallo-beta-lactamase family protein 
          Length = 937

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 19/71 (26%), Positives = 31/71 (43%)
 Frame = -1

Query: 770 NVAMNAWAATSPVIPCGNFFWHLXLKTLYTKGSIGRAFAVPMRTEHXDQASFCPFAPREV 591
           N    +WA+     P  N        +L++KGS+ ++      +   D +S  PF  +  
Sbjct: 693 NTTTTSWASVETSRPEKNTSSGNAEGSLFSKGSLMQSIYKRPSSPLTDNSSALPFLKKLK 752

Query: 590 SVLAELALGHL 558
            VL E+ L HL
Sbjct: 753 KVLGEMGLEHL 763


>At1g77240.1 68414.m08996 AMP-binding protein, putative strong
           similarity to AMP-binding protein GI:1903034 from
           [Brassica napus]; contains Pfam AMP-binding domain
           PF00501
          Length = 545

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -1

Query: 539 VPPQSNSPPGSVLE-PDHAGVLNGDE-RFRHVTTLHAWNET 423
           +P  SNS P +VL   + A  + GD     H TT+H W+ET
Sbjct: 5   LPHASNSCPLTVLGFLERAASVFGDSPSLLHTTTVHTWSET 45


>At3g62370.1 68416.m07006 expressed protein
          Length = 361

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -1

Query: 524 NSPPGSVL--EPDHAGVLNGDERFRHVTTLHAWN 429
           N+ PG +    P   G  NG +RF H+  ++AWN
Sbjct: 160 NAIPGRLYGGNPIDNGEGNGGDRFGHLVDIYAWN 193


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,101,897
Number of Sequences: 28952
Number of extensions: 403672
Number of successful extensions: 961
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1911862400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)