Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_D24
         (917 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual      36   0.011
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    32   0.13 
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    30   0.53 
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    28   1.6  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   6.5  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    26   8.6  
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    26   8.6  

>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 272

 Score = 35.5 bits (78), Expect = 0.011
 Identities = 16/43 (37%), Positives = 27/43 (62%)
 Frame = +2

Query: 461 EFAESAEDGPTTTFLRELAIKYAMVIVSSILERDEKHSDILWN 589
           + AE A +GP+   +  LA KY + I+    E++EK S+I++N
Sbjct: 59  QIAEIAGEGPSFKTMSNLAAKYHVNIIYGFPEKEEKQSNIIYN 101


>SPBC336.05c |||S-adenosylmethionine-
           dependentmethyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 378

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 21/64 (32%), Positives = 31/64 (48%)
 Frame = -3

Query: 501 KVVVGPSSADSANSHHGCFSLVQNAKGIFHHSWKQMMLTPSWPATSMIFLTLLKIAFFCS 322
           ++ V   S ++A SH  CF   QN+  + +       +   +P T   F+ LLK AFF  
Sbjct: 232 QIAVFHQSKNNAASH--CFLKDQNSSILLYKKITYPFMEQLFPPTVQQFMNLLKKAFFDH 289

Query: 321 LTGR 310
           L GR
Sbjct: 290 LFGR 293


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 473  SAEDGPTTTFLRELAIKYAMVIVSSILERDEKHSDILWNXAG 598
            SAE+  + +      +   +++VS++LE DEKH D++    G
Sbjct: 979  SAENTTSFSIFAAQGLTDFLIVVSNLLEMDEKHVDVVLGKLG 1020


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -2

Query: 283  NYSYLHNSRRSGLLVLGRESVC---GDVEVSLLSCSDRGF 173
            ++S   N++R+G L +G ++VC   GD +   LSC   G+
Sbjct: 885  DFSRSVNNQRNGHLTVGSDAVCLSLGDSQFHRLSCDSVGY 924


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 17/69 (24%), Positives = 30/69 (43%)
 Frame = -2

Query: 313 TIGGHRDGMLNYSYLHNSRRSGLLVLGRESVCGDVEVSLLSCSDRGFFQFDFKVIPPPKM 134
           T  GH++ + N S+ H+S      V+         E + L   DR       K++  P  
Sbjct: 151 TFKGHKNHLENRSFFHDSESDNFKVVLSNCAINSKEDNNLVTEDR--VNLGAKLLLVPVQ 208

Query: 133 NSVELFQVA 107
           N ++L +V+
Sbjct: 209 NLIKLLKVS 217


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 92  NNLTGRDLEEFNRIHFGRRNNLEI 163
           NN+  R +EE N I  G+R  LE+
Sbjct: 8   NNILKRHIEEDNNIDNGKRKKLEL 31


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 62  ETHSLESII-NNNLTGRDLEEFNRIHFGRRNNLEIKLK 172
           E H +E +I + N+T  DL  F  + FG+ N   ++ K
Sbjct: 369 EFHQVEGVICDRNITLGDLIGFLEVFFGKMNVKNLRFK 406


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,049,468
Number of Sequences: 5004
Number of extensions: 58619
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)