Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_D24
         (917 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683...   163   2e-40
06_03_0552 + 22040547-22040579,22040655-22040855,22040939-220411...    31   1.7  
11_06_0299 - 22086964-22087002,22087878-22087978,22088079-220888...    30   2.2  
02_04_0096 + 19669428-19669525,19670770-19670818,19671041-196711...    30   3.0  

>07_03_0405 -
           17767303-17767665,17767815-17768039,17768115-17768342,
           17768607-17768621,17768622-17768810,17769106-17769213,
           17769917-17770045
          Length = 418

 Score =  163 bits (395), Expect = 2e-40
 Identities = 99/211 (46%), Positives = 124/211 (58%), Gaps = 11/211 (5%)
 Frame = +2

Query: 71  SLESIINNNLTGRDLEEFNRIHFGRR--NNLE-IKLKESSIXXXXXXXXXXXXXXFPAKD 241
           SL  ++ +NL+    +E +R+  G      LE I L E++               F A  
Sbjct: 28  SLHRLLQSNLSPELFKEASRLLLGLNCGRALEAISLPEATSALAKAHNFDVQAFRFDADK 87

Query: 242 EQTRPPRIVKVGIIQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQ----- 406
           E  R PR+++VG+IQ+SIA+PT     +QKKAI  KVK +ID AG  GVNI+C Q     
Sbjct: 88  EYLRQPRVIRVGLIQNSIAIPTTSHFADQKKAIMEKVKPMIDAAGDAGVNILCLQVSQLS 147

Query: 407 EWWNMPFAFCTREKQPWCEFAESAEDGPTTTFLRELAIKYAMVIVSSILERDEKHSDILW 586
           E W MPFAFCTREK+ WCEFAE   DG +T FL++LA KY MVIVS ILERD  H +I+W
Sbjct: 148 EAWTMPFAFCTREKR-WCEFAEPV-DGESTQFLQQLAKKYNMVIVSPILERDVNHGEIVW 205

Query: 587 NXA---GCH**PRKRDRGSIAKNHIPRVGEF 670
           N A   G H        G   KNHIPRVG+F
Sbjct: 206 NTAVVIGNH----GNIIGIHRKNHIPRVGDF 232


>06_03_0552 +
           22040547-22040579,22040655-22040855,22040939-22041115,
           22041791-22041984,22042277-22042539,22042964-22043073
          Length = 325

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 392 IICFQEWWNMPFAFC-TREKQPWCEFAESAEDGPTTTFLRELAI 520
           I+C  EWW+   A C  REK   C   +  + GP   FL +L I
Sbjct: 66  IVCSAEWWDEHLARCNNREKGIKCNHVKFRKQGP--KFLDDLRI 107


>11_06_0299 -
           22086964-22087002,22087878-22087978,22088079-22088826,
           22089201-22089373,22089403-22089676,22089761-22090069
          Length = 547

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +2

Query: 392 IICFQEWWNMPFAFC-TREKQPWCEFAESAEDGPTTTFLRELAIKYAMVIVS 544
           I+C  EWW    A C  REK   C   +  + GP   FL +L I +    VS
Sbjct: 91  IVCSLEWWEEHLARCNNREKGIKCNHVKFRKQGP--KFLDDLHIIFGKSHVS 140


>02_04_0096 +
           19669428-19669525,19670770-19670818,19671041-19671132,
           19671235-19671386,19671478-19671524,19671617-19671650,
           19671769-19671935,19672070-19672166,19672239-19672408
          Length = 301

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 18/68 (26%), Positives = 36/68 (52%)
 Frame = +2

Query: 353 KKIIDVAGQEGVNIICFQEWWNMPFAFCTREKQPWCEFAESAEDGPTTTFLRELAIKYAM 532
           +++I  A ++G NI+  QE +   + FC  ++  + + A+  +  PT    ++LA +  +
Sbjct: 32  ERLIREAHKKGANIVLVQELFEGQY-FCQAQRLDFFQRAKPYKGNPTIIRFQKLAKELEV 90

Query: 533 VIVSSILE 556
           VI  S  E
Sbjct: 91  VIPVSFFE 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,407,880
Number of Sequences: 37544
Number of extensions: 435798
Number of successful extensions: 1155
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1151
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)