Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_D24
(917 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42548| Best HMM Match : DNA_binding_1 (HMM E-Value=5.2) 48 8e-06
SB_34841| Best HMM Match : ResIII (HMM E-Value=1.6) 31 1.3
SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022) 31 1.7
SB_47836| Best HMM Match : F5_F8_type_C (HMM E-Value=0.022) 29 4.0
SB_40775| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_27173| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_24587| Best HMM Match : ResIII (HMM E-Value=0.82) 29 5.3
SB_26769| Best HMM Match : Popeye (HMM E-Value=1.8) 29 7.0
SB_22520| Best HMM Match : F5_F8_type_C (HMM E-Value=0.022) 28 9.2
SB_15536| Best HMM Match : MdcD (HMM E-Value=3.9) 28 9.2
>SB_42548| Best HMM Match : DNA_binding_1 (HMM E-Value=5.2)
Length = 101
Score = 48.4 bits (110), Expect = 8e-06
Identities = 26/92 (28%), Positives = 44/92 (47%)
Frame = +2
Query: 53 MENETHSLESIINNNLTGRDLEEFNRIHFGRRNNLEIKLKESSIXXXXXXXXXXXXXXFP 232
M E SL + NL DL+E RI +G + ++ L +++
Sbjct: 1 MAAEFESLNKTLEKNLPAEDLKEVKRILYGNPVS-DLSLPAAAVSVAAELDFELAGYKID 59
Query: 233 AKDEQTRPPRIVKVGIIQHSIAVPTDRPVNEQ 328
A E+ R PR+V++G +Q+ I PT+ P+ +Q
Sbjct: 60 AAAEELRQPRLVRIGAVQNKIVEPTNMPIAKQ 91
>SB_34841| Best HMM Match : ResIII (HMM E-Value=1.6)
Length = 949
Score = 31.1 bits (67), Expect = 1.3
Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +2
Query: 233 AKDEQTRPPRIVKVGIIQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 370
A D + P VK H + +PT++P+ E + + +++K+ ++ +V
Sbjct: 762 AHDHRNNPSLAVKAQTYHHYLCIPTEKPIEEWRPSELWHKLDRLAEV 808
>SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)
Length = 1671
Score = 30.7 bits (66), Expect = 1.7
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 613 GSLMTTRXVPKYVRMLLVPF*YRGHDHHCVLDGEFPKE 500
G ++T + R L+ PF +R +DH V+D FPK+
Sbjct: 61 GRIVTHPVNEELERKLIKPFYFRQYDHGSVVDAIFPKD 98
>SB_47836| Best HMM Match : F5_F8_type_C (HMM E-Value=0.022)
Length = 1002
Score = 29.5 bits (63), Expect = 4.0
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Frame = -2
Query: 427 EGHIPPLLETD--DVNTLLAGXIDDLLDFIENCFLLLVDWTIGGHRDGMLNYSYLHNSRR 254
+GH+ LLE + D L+ ++LLD LL V++ GH G+L +L
Sbjct: 312 KGHLVGLLEVEFLDKEHLVGLLEEELLDKGHLVGLLEVEFLDKGHLVGLLEVEFLDKGHL 371
Query: 253 SGLL---VLGRESVCGDVEVSLL 194
GLL L + + G +EV L
Sbjct: 372 VGLLEEEFLDKGQLVGLLEVEFL 394
>SB_40775| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 712
Score = 29.5 bits (63), Expect = 4.0
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -3
Query: 429 AKGIFHHSWKQMMLTP 382
AKG+FHH WK++ + P
Sbjct: 366 AKGLFHHKWKKITVEP 381
>SB_27173| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1206
Score = 29.5 bits (63), Expect = 4.0
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 233 AKDEQTRPPRIVKVGIIQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 370
AKD + P VK H + +P ++P+ E + + + +K+ ++ +V
Sbjct: 823 AKDHRNNPRLAVKAQTYHHYLCIPAEKPIEEWRPSELGHKLDRLAEV 869
>SB_24587| Best HMM Match : ResIII (HMM E-Value=0.82)
Length = 250
Score = 29.1 bits (62), Expect = 5.3
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 233 AKDEQTRPPRIVKVGIIQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 370
A D + P VK H + +PT++P+ E + + + +K+ ++ +V
Sbjct: 177 AHDHRNNPRLAVKAQTYHHYLCIPTEKPIEEWRPSELGHKLDRLAEV 223
>SB_26769| Best HMM Match : Popeye (HMM E-Value=1.8)
Length = 411
Score = 28.7 bits (61), Expect = 7.0
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = -3
Query: 717 RXGXGLPSXVLVGXRX-NSPTLGMWFFAMLPRSRFRGH**QPAXFQSMSECFSSLSNIED 541
+ G LPS + + N+PTLG + FAM+ R+ G A + + N D
Sbjct: 18 KVGGPLPSGTFLSRKWVNNPTLGEFCFAMIGRADIEGSKSNVAMNAWLPQASYPCGNFSD 77
Query: 540 TITIAYL 520
T ++ L
Sbjct: 78 TSSLKLL 84
>SB_22520| Best HMM Match : F5_F8_type_C (HMM E-Value=0.022)
Length = 703
Score = 28.3 bits (60), Expect = 9.2
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Frame = -2
Query: 427 EGHIPPLLETD--DVNTLLAGXIDDLLDFIENCFLLLVDWTIGGHRDGMLNYSYLHNSRR 254
+GH+ LLE D L+ ++LLD LL V++ GH G+L +L
Sbjct: 307 KGHLVGLLEVKFLDKEHLVGLLEEELLDKGHLVGLLEVEFLDKGHLVGLLEVEFLDKGHL 366
Query: 253 SGLL---VLGRESVCGDVEVSLL 194
GLL L + + G +EV L
Sbjct: 367 VGLLEEEFLDKGQLVGLLEVEFL 389
>SB_15536| Best HMM Match : MdcD (HMM E-Value=3.9)
Length = 146
Score = 28.3 bits (60), Expect = 9.2
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = -3
Query: 459 HHGCFSLVQNAKGIFHHSWKQMMLTPSW 376
HH CF ++ +A + Q ++PSW
Sbjct: 44 HHACFGIIPSALSVLVERGDQEAVSPSW 71
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,722,889
Number of Sequences: 59808
Number of extensions: 465330
Number of successful extensions: 1947
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1943
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2657535823
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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