Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_D24
         (917 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64370.1 68418.m08086 beta-ureidopropionase, putative / beta-...   179   3e-45
At5g12040.2 68418.m01407 carbon-nitrogen hydrolase family protei...    36   0.050
At5g12040.1 68418.m01408 carbon-nitrogen hydrolase family protei...    36   0.050
At5g67240.1 68418.m08475 exonuclease family protein contains exo...    29   4.3  
At5g38270.1 68418.m04613 F-box family protein contains F-box dom...    28   10.0 

>At5g64370.1 68418.m08086 beta-ureidopropionase, putative /
           beta-alanine synthase, putative similar to beta-alanine
           synthase [Dictyostelium discoideum] GI:14334061;
           contains Pfam profile PF00795: hydrolase,
           carbon-nitrogen family
          Length = 408

 Score =  179 bits (435), Expect = 3e-45
 Identities = 100/203 (49%), Positives = 126/203 (62%), Gaps = 3/203 (1%)
 Frame = +2

Query: 71  SLESIINNNLTGRDLEEFNRIHFGR---RNNLEIKLKESSIXXXXXXXXXXXXXXFPAKD 241
           SL  +++ NL     +E NR+  GR   R+  +I L ES+               F A  
Sbjct: 22  SLHQLLSANLKPELYQEVNRLLLGRNCGRSLEQIVLPESAKALSSKHDFDLQAASFSADK 81

Query: 242 EQTRPPRIVKVGIIQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQEWWNM 421
           EQ R PR+V+VG+IQ+SIA+PT  P ++Q + IF+K+K IID AG  GVNI+C QE W M
Sbjct: 82  EQMRNPRVVRVGLIQNSIALPTTAPFSDQTRGIFDKLKPIIDAAGVAGVNILCLQEAWTM 141

Query: 422 PFAFCTREKQPWCEFAESAEDGPTTTFLRELAIKYAMVIVSSILERDEKHSDILWNXAGC 601
           PFAFCTRE++ WCEFAE   DG +T FL+ELA KY MVIVS ILERD  H ++LWN A  
Sbjct: 142 PFAFCTRERR-WCEFAEPV-DGESTKFLQELAKKYNMVIVSPILERDIDHGEVLWNTAVI 199

Query: 602 H**PRKRDRGSIAKNHIPRVGEF 670
                    G   KNHIPRVG+F
Sbjct: 200 I-GNNGNIIGKHRKNHIPRVGDF 221


>At5g12040.2 68418.m01407 carbon-nitrogen hydrolase family protein
           similar to Nit protein 2 [Homo sapiens] GI:9367116;
           contains Pfam profile PF00795: hydrolase,
           carbon-nitrogen family
          Length = 294

 Score = 35.5 bits (78), Expect = 0.050
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
 Frame = +2

Query: 317 VNEQKKAIFNKVKKIIDVAGQEGVNIICFQEWWNMPFAFCTREKQP-WCEFAESAED-GP 490
           V   KK   +  KK I+ A  +G  ++   E WN P+   + +  P + E  ++  D  P
Sbjct: 97  VTSDKKRNISHAKKAIEEAASKGAKLVLLPEIWNSPY---SNDSFPVYAEEIDAGGDASP 153

Query: 491 TTTFLRELAIKYAMVIVSSILERDEKHSDILWN 589
           +T  L E++ +  + I+   +   E+  D L+N
Sbjct: 154 STAMLSEVSKRLKITIIGGSI--PERVGDRLYN 184


>At5g12040.1 68418.m01408 carbon-nitrogen hydrolase family protein
           similar to Nit protein 2 [Homo sapiens] GI:9367116;
           contains Pfam profile PF00795: hydrolase,
           carbon-nitrogen family
          Length = 369

 Score = 35.5 bits (78), Expect = 0.050
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
 Frame = +2

Query: 317 VNEQKKAIFNKVKKIIDVAGQEGVNIICFQEWWNMPFAFCTREKQP-WCEFAESAED-GP 490
           V   KK   +  KK I+ A  +G  ++   E WN P+   + +  P + E  ++  D  P
Sbjct: 97  VTSDKKRNISHAKKAIEEAASKGAKLVLLPEIWNSPY---SNDSFPVYAEEIDAGGDASP 153

Query: 491 TTTFLRELAIKYAMVIVSSILERDEKHSDILWN 589
           +T  L E++ +  + I+   +   E+  D L+N
Sbjct: 154 STAMLSEVSKRLKITIIGGSI--PERVGDRLYN 184


>At5g67240.1 68418.m08475 exonuclease family protein contains
           exonuclease domain, Pfam:PF00929
          Length = 745

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 493 HDLPSGTRHQVRNGDRVLDIRKGREAFGH 579
           HD+PS   H V NGD  LD++  +   G+
Sbjct: 441 HDVPSQELHGVLNGDFTLDVKPPKRKGGY 469


>At5g38270.1 68418.m04613 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 406

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +2

Query: 356 KIIDVAGQEGVNIICFQEWWNMPFAFCTRE 445
           K++D +G + + +I    +W  PF + T++
Sbjct: 244 KVVDFSGNDPIEVIDKNPYWEHPFRYLTKK 273


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,555,772
Number of Sequences: 28952
Number of extensions: 332711
Number of successful extensions: 866
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2178500352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)